prot_H-elongata_contig96710.17053.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig96710.17053.1
Unique Nameprot_H-elongata_contig96710.17053.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length109
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96710.17053.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 18..51
e-value: 4.4E-4
score: 29.6
coord: 52..85
e-value: 2.1
score: 17.4
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 52..85
score: 8.526
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 18..51
score: 9.499
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 1..17
score: 5.015
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..104
e-value: 2.8E-27
score: 97.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..103
NoneNo IPR availablePFAMPF13414TPR_11coord: 25..63
e-value: 5.2E-7
score: 29.3
coord: 69..94
e-value: 1.9E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR44943FAMILY NOT NAMEDcoord: 2..101
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..103
score: 23.139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96710contigH-elongata_contig96710:318..2131 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96710.17053.1mRNA_H-elongata_contig96710.17053.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig96710 318..2143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig96710.17053.1 ID=prot_H-elongata_contig96710.17053.1|Name=mRNA_H-elongata_contig96710.17053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MEAAQHFRVAADLDPKDVDIHISLGNVLRQDGESAAAIKAYKQAMALDSS
NRMAAYNLGGILQDNFQEEKAIQCFNKTIQIDPGYADAHYNLGICLETVG
RLEVRGIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom