prot_H-elongata_contig96049.17003.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig96049.17003.1
Unique Nameprot_H-elongata_contig96049.17003.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length247
Homology
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.190e-46
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVGG 82
            T++RVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDH+GGGIVHFR+ DDMDYALRKLDGSDFRNPFEKSRI+VLPHRGVGG
Sbjct:  115 TEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISVLPHRGVGG 195          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.490e-37
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVGG 82
            T++RVIVTGLPPSASWQDLKDHMRKAG+  YTDVDHRGGGIVH+ + DDM+YALRKLD S+FRNPF+ S I VLPHRG  G
Sbjct:  101 TEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYNTRDDMEYALRKLDDSEFRNPFDHSFIRVLPHRGASG 181          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.030e-35
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 78
            T++RVIVTGLPPSASWQDLKDHMRKAG+  YTDVDHRGGGIVH+ +  DMDYALRKLD S+FRNPF+KS I VLPHR
Sbjct:  120 TEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYATRSDMDYALRKLDDSEFRNPFDKSYIRVLPHR 196          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 5.660e-30
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 78
            T++R +VTGLP SASWQDLKDHMRKAG+  Y DVDH+GGG+VHF + + MDYALRKLDGS+F N ++ + I+VLPHR
Sbjct:  192 TEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISVLPHR 268          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.290e-25
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINV 74
            T++R +VTGLP SASWQDLKDHMRKAG+  Y DVDH+GGG+VHF + + MDYALRKLDGS+F N ++ + I+V
Sbjct:  196 TEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNREGMDYALRKLDGSEFSNRYDTAIISV 268          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 3.650e-25
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHRGG-GIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVG 81
            TD+RVIVTGLP SASWQDLKDHMRKAG+ T+T V  D RG  G+V F S+DDM  ALRKLDGS+FRNPF+K  I V   R  G
Sbjct:  112 TDYRVIVTGLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGNMGLVDFSSYDDMQNALRKLDGSEFRNPFDKCTIKVREDRQGG 194          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A699ZIZ3_HAELA (Uncharacterized protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIZ3_HAELA)

HSP 1 Score: 107 bits (266), Expect = 1.250e-24
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHRGG--GIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVG 81
            TDFRVIVT LP SASWQDLKDHMRKAG+ T+T V  D RGG  G+V F + DDM  ALRKLD S+FRNPF+K+ I V   RG G
Sbjct:  126 TDFRVIVTNLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGGNMGLVDFSTMDDMQTALRKLDQSEFRNPFDKTLIRVKEDRGGG 209          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.720e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINV 74
            +DFRVIVTGLP SASWQDLKDH R+AG+  YTDVD  GGG+V FR+  DM+YAL +LD S FRNPF++S+I V
Sbjct:  102 SDFRVIVTGLPHSASWQDLKDHFRQAGDVVYTDVDRIGGGLVEFRTLRDMEYALDRLDYSRFRNPFDESKIRV 174          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A7S0I1L9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1L9_9CRYP)

HSP 1 Score: 105 bits (261), Expect = 1.690e-23
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHR 78
            +D+RVI++GLP SASWQDLKD+ R+AGE  YTDVD +GGGIV F + DD DYA++K D ++F NPF++  I V+  R
Sbjct:  104 SDYRVIISGLPKSASWQDLKDYFRQAGEIVYTDVDRQGGGIVEFANEDDRDYAIKKFDDTEFSNPFDRGYIRVMKPR 180          
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Match: A0A699YY48_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YY48_HAELA)

HSP 1 Score: 105 bits (263), Expect = 1.730e-23
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 0
Query:    2 TDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHRGG--GIVHFRSWDDMDYALRKLDGSDFRNPFEKSRINVLPHRGVGG 82
            TDFRVIVT LP SASWQDLKDHMRKAG+ T+T V  D RGG  G+V F + D+M  ALRKLD S+FRNPF+K+ I V   +G GG
Sbjct:  138 TDFRVIVTNLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGGNMGLVDFSTADNMQTALRKLDQSEFRNPFDKTTIRVKEDKGGGG 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96049.17003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB97_ECTSI1.190e-4692.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQ88_9STRA3.490e-3777.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC30_9STRA2.030e-3580.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPT5_ECTSI5.660e-3067.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN34_9PHAE1.290e-2565.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0RPW5_9CHLO3.650e-2567.47Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A699ZIZ3_HAELA1.250e-2466.67Uncharacterized protein (Fragment) n=2 Tax=Haemato... [more]
A0A7S2B3Q3_9STRA1.720e-2468.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0I1L9_9CRYP1.690e-2358.44Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A699YY48_HAELA1.730e-2364.71Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..73
e-value: 5.5E-5
score: 32.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..65
e-value: 2.8E-8
score: 33.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..79
score: 9.831
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..78
e-value: 1.2E-20
score: 75.2
NoneNo IPR availablePANTHERPTHR23003:SF27NUCLEOLAR PROTEIN 3coord: 2..135
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..135
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96049contigH-elongata_contig96049:231..2412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96049.17003.1mRNA_H-elongata_contig96049.17003.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig96049 231..2424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig96049.17003.1 ID=prot_H-elongata_contig96049.17003.1|Name=mRNA_H-elongata_contig96049.17003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
MTDFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHRGGGIVHFRSWDD
MDYALRKLDGSDFRNPFEKSRINVLPHRGVGGGGGRDSRSRSRSPKRRRA
RSPSSSRSRSKSVRRRRGRSISRSKSRSRSRSRSRVGKRRSRRSLSRSRS
RPRLRSRSRSRSRSRSRSRSRASGGGKKARRYDDDDIEEPKVPRNLRHKD
DDRRSASPEANGAANGKDDHEDSKASSVDDAEGDDAGHRDRDSDDDD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf