prot_H-elongata_contig95511.16956.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95511.16956.1
Unique Nameprot_H-elongata_contig95511.16956.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig95511.16956.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.600e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 0 
Query:    4 VKRALNLVQMMQSEGVAPTEITYNVVLRLCGLGGCWAMGMEV 45
            VKRAL LVQMM+SEG+APT ITYNV+LRLCGLGGCWA G+E+
Sbjct:  435 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
[Close]
BLAST of mRNA_H-elongata_contig95511.16956.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.680e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 0 
Query:    4 VKRALNLVQMMQSEGVAPTEITYNVVLRLCGLGGCWAMGMEV 45
            VKRAL LVQMM+SEG+APT ITYNV+LRLCGLGGCWA G+E+
Sbjct:  126 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95511.16956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0B1_9PHAE4.600e-1480.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY15_ECTSI4.680e-1480.95PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..100
e-value: 1.0E-24
score: 89.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 61..93
e-value: 1.4E-4
score: 19.8
coord: 24..57
e-value: 2.9E-6
score: 25.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..21
score: 5.634
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 57..91
score: 9.821
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 22..56
score: 9.854
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 4..92
e-value: 1.8E-8
score: 34.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 5..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95511contigH-elongata_contig95511:6..1134 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95511.16956.1mRNA_H-elongata_contig95511.16956.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95511 6..1134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95511.16956.1 ID=prot_H-elongata_contig95511.16956.1|Name=mRNA_H-elongata_contig95511.16956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
SVQVKRALNLVQMMQSEGVAPTEITYNVVLRLCGLGGCWAMGMEVMSMME
DEGIEPTLPHYNSLFVAFKTGERWREAANLFRKMRAAGVRPNALTYGPLI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long