prot_H-elongata_contig95494.16953.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95494.16953.1
Unique Nameprot_H-elongata_contig95494.16953.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
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BLAST of mRNA_H-elongata_contig95494.16953.1 vs. uniprot
Match: D7FV92_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV92_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 7.090e-15
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0 
Query:    8 RVEWPLHLILTREAMQTYNRLFRMLALVKRASFELDRVWPILMQ 51
            R+EWP+HL+LTRE MQTYNRLFR+LA VKRAS EL+RVWP LMQ
Sbjct:  868 RLEWPMHLVLTRETMQTYNRLFRLLACVKRASLELERVWPTLMQ 911
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95494.16953.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV92_ECTSI7.090e-1579.55Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042241Gamma-tubulin complex, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 2..61
e-value: 3.4E-14
score: 54.7
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 8..57
e-value: 1.5E-11
score: 44.3
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 8..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95494contigH-elongata_contig95494:699..881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95494.16953.1mRNA_H-elongata_contig95494.16953.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95494 699..881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95494.16953.1 ID=prot_H-elongata_contig95494.16953.1|Name=mRNA_H-elongata_contig95494.16953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLVLFFVRVEWPLHLILTREAMQTYNRLFRMLALVKRASFELDRVWPILM
QLMQQQRLTPA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042241GCP_C_sf
IPR040457GCP_C
IPR007259GCP