prot_H-elongata_contig95349.16943.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95349.16943.1
Unique Nameprot_H-elongata_contig95349.16943.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.500e-19
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPD++F   QL++F DNPGP HWRAA++ L+YL  TR  G+  GG        LSA+VDADY  CPDTRR VS   ++  G  IS
Sbjct:  645 TRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPIS 730          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A328KN85_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KN85_9BACI)

HSP 1 Score: 84.0 bits (206), Expect = 9.510e-19
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPDIS A   L +F  NPG  HW AAQ+VL+YL  T   GITY  +  G + L  + D+D+   PDTRRS S  A M+AGG +S
Sbjct:   17 TRPDISTAVGSLCRFISNPGRPHWVAAQRVLRYLAGTSSFGITYHRQEQGSSDLFGYSDSDWAGDPDTRRSTSGFAFMLAGGPVS 101          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR)

HSP 1 Score: 88.6 bits (218), Expect = 1.340e-18
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAI 85
            TRPD+++   QL++F +NPG  HW+AA +VL+YL  TR+LGI Y G   G  KL+A+ DAD+G+ PD RRSVS   V ++G  +
Sbjct: 1016 TRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKGTRELGIVYSGTSSG-VKLTAYTDADWGSNPDDRRSVSGTMVTISGAPV 1098          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-18
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPGGGTK-LSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPD++F   QL++F DNP P HWRAA++ L+YL  TR  G+  GG        LSA+VDADY  CPDTRR VS   ++  G  IS
Sbjct: 1789 TRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPIS 1874          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A6G0WNM5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNM5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.590e-18
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGG-----EPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPD++F   QL++F +NPGP HWRAA++VL+Y+  TR  G+  GG     +P     LSA+VDADY  C DTRR VS   +++ G  IS
Sbjct:  304 TRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKP----FLSAYVDADYANCKDTRRCVSGYVLLLLGSPIS 389          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A6G0W2A7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2A7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.130e-18
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGG-----EPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPD++F   QL++F +NPGP HWRAA++VL+Y+  TR  G+  GG     +P     LSA+VDADY  C DTRR VS   +++ G  IS
Sbjct:  380 TRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKP----FLSAYVDADYANCKDTRRCVSGYVLLLLGSPIS 465          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A6G0X457_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X457_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.560e-18
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGG-----EPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPD++F   QL++F +NPGP HWRAA++VL+Y+  TR  G+  GG     +P     LSA+VDADY  C DTRR VS   +++ G  IS
Sbjct:  582 TRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKP----FLSAYVDADYANCKDTRRCVSGYVLLLFGSPIS 667          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A6G0X4C5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4C5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.760e-18
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGG-----EPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS 86
            TRPD++F   QL++F +NPGP HWRAA++VL+Y+  TR  G+  GG     +P     LSA+VDADY  C DTRR VS   +++ G  IS
Sbjct: 1577 TRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKP----FLSAYVDADYANCKDTRRCVSGYVLLLFGSPIS 1662          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI)

HSP 1 Score: 84.0 bits (206), Expect = 5.640e-17
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAI 85
            TRPD+S+    L+KF + P   HW AA++VL+YL RT ++GIT+ G      +L A+ D+DY +CPDTR+S+S   +M   G +
Sbjct: 1097 TRPDLSYVVSVLSKFLERPSNAHWNAAKRVLKYLKRTLNVGITFDGNCDQSNQLVAFSDSDYASCPDTRKSISSVVLMFNNGPV 1180          
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.330e-16
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 0
Query:    2 TRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAI 85
            TRPDI+    +L++F +NPG  HW A  KV++YL +T+D+GITY G  G  TKL+A+ DAD+    D RRSVS   +MM G  +
Sbjct:  327 TRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGLLG--TKLTAYSDADWAGNRDDRRSVSGVMLMMCGAPV 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95349.16943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W6P6_9STRA1.500e-1952.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A328KN85_9BACI9.510e-1950.59Uncharacterized protein (Fragment) n=1 Tax=Bacillu... [more]
W2WEK3_PHYPR1.340e-1850.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W780_9STRA1.360e-1851.16Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0WNM5_9STRA5.590e-1848.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0W2A7_9STRA6.130e-1848.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0X457_9STRA8.560e-1848.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0X4C5_9STRA8.760e-1848.89Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A0J7K651_LASNI5.640e-1744.05Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A225UK66_9STRA2.330e-1648.81Integrase, catalytic core protein (Fragment) n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..76
NoneNo IPR availablePANTHERPTHR11439:SF282coord: 2..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95349contigH-elongata_contig95349:582..842 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95349.16943.1mRNA_H-elongata_contig95349.16943.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95349 423..845 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95349.16943.1 ID=prot_H-elongata_contig95349.16943.1|Name=mRNA_H-elongata_contig95349.16943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MTRPDISFAAHQLAKFNDNPGPTHWRAAQKVLQYLWRTRDLGITYGGEPG
GGTKLSAWVDADYGTCPDTRRSVSEGAVMMAGGAIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like