prot_H-elongata_contig95332.16939.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95332.16939.1
Unique Nameprot_H-elongata_contig95332.16939.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.530e-58
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 0
Query:    1 KRSLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            KRSLQVARK +WFEKFNWFI+SENY+V+SGR+AQQNE+VVKKYLR GDIYVHADLHGASSCVVRNK   DPSGKR VSPLALEEAG MTVCRS AWGAKMVTSAWWVYADQV
Sbjct:  656 KRSLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNK---DPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 764          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.790e-49
Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 0
Query:    1 KRSLQVARKTHWFEKFNWFITSENYM-----------VVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYAD 110
            KRSL VARK +WFEKF+WF++SENY+           V+SG+DAQQNE +VK+YLR GDIYVHADLHGAS+CVVRNK   DP+GKRPVS +A++EAG MTVCRS AW AKMVTSAWWVYAD
Sbjct:  642 KRSLPVARKPYWFEKFSWFVSSENYLXXXXXXXXXXLVLSGKDAQQNEQLVKRYLRPGDIYVHADLHGASTCVVRNK---DPAGKRPVSAMAIQEAGCMTVCRSAAWAAKMVTSAWWVYAD 759          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.150e-45
Identity = 74/112 (66.07%), Postives = 92/112 (82.14%), Query Frame = 0
Query:    1 KRSLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            KR L+  RK +WFEKF+WFITSEN++V++GRDAQQNE +VK+YLR GD YVHAD+HGASSC++RNK   DP G  P+SP+AL EAG MTVCRS AW +K+  +AWWV+A QV
Sbjct:  519 KRQLKAVRKPYWFEKFHWFITSENFLVLAGRDAQQNEQLVKRYLRPGDAYVHADMHGASSCILRNK---DPKGLAPLSPVALHEAGCMTVCRSAAWSSKIFANAWWVHASQV 627          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: K1QG24_CRAGI (Serologically defined colon cancer antigen 1-like protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QG24_CRAGI)

HSP 1 Score: 163 bits (412), Expect = 3.480e-44
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 0
Query:    3 SLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            ++  ARKT+WFEKF WFITSENY+V+ GRD QQNE++VK+YLR GD+YVHADLHGASSCV++N     PSG+ PV P +L EAG+M +C SVAW AK+VTSAWWVY DQV
Sbjct:  489 TINKARKTYWFEKFLWFITSENYLVIGGRDQQQNEMIVKRYLRPGDLYVHADLHGASSCVLKN-----PSGE-PVPPKSLNEAGTMAICNSVAWDAKVVTSAWWVYHDQV 592          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A7S1IEK7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IEK7_9EUGL)

HSP 1 Score: 161 bits (408), Expect = 6.440e-44
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    3 SLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            +++V RK +WFEKFNWFITSEN +V+SGRDAQQNE++VK+YLRQGD+YVHADLHGASSC+++N     P GK PV P++L +AGSM V RS AW +K++TSAWWVY +QV
Sbjct:  484 TIKVLRKPYWFEKFNWFITSENLLVISGRDAQQNEILVKRYLRQGDVYVHADLHGASSCIIKN-----PLGK-PVPPVSLSQAGSMCVARSAAWDSKIITSAWWVYHNQV 587          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A7S2T9B4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9B4_9CHLO)

HSP 1 Score: 150 bits (378), Expect = 7.620e-44
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 0
Query:    1 KRSLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            K   +VARK +WFEKF+WF++SENY+VVSGRDAQQNEL+VK+YL   D+YVHAD+HGA+SCVVRN+V     G  P+ P  L EAGS  VC S AW +K  T +WWV++ QV
Sbjct:   37 KPGFKVARKQYWFEKFDWFVSSENYLVVSGRDAQQNELLVKRYLTTHDVYVHADIHGAASCVVRNRV-----GGGPIPPTTLLEAGSFCVCHSQAWNSKFTTGSWWVHSSQV 143          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A0S7LM57_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM57_9TELE)

HSP 1 Score: 148 bits (374), Expect = 1.080e-42
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 0
Query:    3 SLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            ++Q ARK +WFEKF WFI+SENY+V++GRD QQNE++VK+YLR GD+YVHADLHGA+SCV++N     PSG   V P  L EA +M VC S AW AK++TSAWWV+  QV
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN-----PSGDA-VPPRTLTEAATMAVCYSAAWDAKIITSAWWVHHHQV 117          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A0L8GHR6_OCTBM (NFACT-R_1 domain-containing protein n=2 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8GHR6_OCTBM)

HSP 1 Score: 158 bits (399), Expect = 1.120e-42
Identity = 73/110 (66.36%), Postives = 85/110 (77.27%), Query Frame = 0
Query:    3 SLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            ++  ARKTHWFEKF WFI+SENY+VV GRD QQNE++VKKYLR GD+YVHADLHGASS V++N   K      PV P  L EAGSM +C S AW AK++TSAWWVY DQV
Sbjct:  484 TINKARKTHWFEKFLWFISSENYVVVGGRDQQQNEILVKKYLRPGDLYVHADLHGASSVVIKNHTVK------PVPPKTLNEAGSMAICNSAAWDAKVITSAWWVYHDQV 587          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: W7TDM9_9STRA (Nuclear export mediator factor nemf n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDM9_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.160e-42
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = 0
Query:    1 KRSLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            KR+L V RK +WFEKF+WFITS+N++VVSGRDAQQNEL+VK+YLR GD YVHADL GA+SCVVR+K      G   VSP+AL+EAG + V RS AW AKMVTSAWWV A QV
Sbjct:   22 KRTLSVVRKPYWFEKFHWFITSDNHLVVSGRDAQQNELLVKRYLRVGDAYVHADLPGAASCVVRHKGALGGVGAE-VSPVALQEAGCLAVSRSSAWKAKMVTSAWWVGAGQV 132          
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Match: A0A433TV17_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TV17_ELYCH)

HSP 1 Score: 158 bits (400), Expect = 1.450e-42
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 0
Query:    3 SLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIYVHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKMVTSAWWVYADQV 112
            S+   RKT+WFEKF WFI+SENY+V+ GRD QQNELVVKKY+R GD+YVHADLHGASSC+++N     P G+ PV P  L EAG+M +C S AW +K+VTSAWWVY DQV
Sbjct:  488 SINKTRKTYWFEKFLWFISSENYLVIGGRDQQQNELVVKKYMRPGDLYVHADLHGASSCIIKN-----PGGE-PVPPKTLNEAGTMAICNSAAWDSKVVTSAWWVYHDQV 591          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95332.16939.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI2.530e-5887.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCK8_9STRA6.790e-4970.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1AHC6_9STRA2.150e-4566.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K1QG24_CRAGI3.480e-4468.18Serologically defined colon cancer antigen 1-like ... [more]
A0A7S1IEK7_9EUGL6.440e-4466.36Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S2T9B4_9CHLO7.620e-4460.71Hypothetical protein (Fragment) n=2 Tax=Chloropico... [more]
A0A0S7LM57_9TELE1.080e-4261.82NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A0L8GHR6_OCTBM1.120e-4266.36NFACT-R_1 domain-containing protein n=2 Tax=Octopu... [more]
W7TDM9_9STRA1.160e-4268.75Nuclear export mediator factor nemf n=3 Tax=Nannoc... [more]
A0A433TV17_ELYCH1.450e-4265.45Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008532NFACT, RNA-binding domainPFAMPF05670NFACT-R_1coord: 15..113
e-value: 2.0E-28
score: 99.2
NoneNo IPR availablePANTHERPTHR15239UNCHARACTERIZEDcoord: 3..112
NoneNo IPR availablePANTHERPTHR15239:SF6NUCLEAR EXPORT MEDIATOR FACTOR NEMFcoord: 3..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95332contigH-elongata_contig95332:41..697 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95332.16939.1mRNA_H-elongata_contig95332.16939.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95332 41..697 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95332.16939.1 ID=prot_H-elongata_contig95332.16939.1|Name=mRNA_H-elongata_contig95332.16939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
KRSLQVARKTHWFEKFNWFITSENYMVVSGRDAQQNELVVKKYLRQGDIY
VHADLHGASSCVVRNKVKKDPSGKRPVSPLALEEAGSMTVCRSVAWGAKM
VTSAWWVYADQVRFYLFVAY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008532NFACT_RNA-bd