prot_H-elongata_contig95278.16936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95278.16936.1
Unique Nameprot_H-elongata_contig95278.16936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
[Close]
BLAST of mRNA_H-elongata_contig95278.16936.1 vs. uniprot
Match: A0A812ZQG3_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812ZQG3_9DINO)

HSP 1 Score: 47.8 bits (112), Expect = 8.350e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    2 PDHYTYACLMRAAGLMGSWEEALSMLDEMDKAGISANVVVYNTIIASLAKAEQ 54
            P    +  ++R A   G+W  ALS++DEM KA +  + VVYNT++A+   AEQ
Sbjct:  236 PSPKDFGNMVRFASSTGNWRLALSLIDEMHKAKVEVDSVVYNTVLAACVSAEQ 288
[Close]
BLAST of mRNA_H-elongata_contig95278.16936.1 vs. uniprot
Match: A0A812M5Q8_SYMPI (Hypothetical protein n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812M5Q8_SYMPI)

HSP 1 Score: 47.8 bits (112), Expect = 8.370e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    2 PDHYTYACLMRAAGLMGSWEEALSMLDEMDKAGISANVVVYNTIIASLAKAEQ 54
            P    +  ++R A   G+W  ALS++DEM KA +  + VVYNT++A+   AEQ
Sbjct:  300 PSPKDFGNMVRFASSTGNWRLALSLIDEMHKAKVEVDSVVYNTVLAACVSAEQ 352
[Close]
BLAST of mRNA_H-elongata_contig95278.16936.1 vs. uniprot
Match: A0A1Q9ERA9_SYMMI (Pentatricopeptide repeat-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9ERA9_SYMMI)

HSP 1 Score: 47.8 bits (112), Expect = 8.380e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    2 PDHYTYACLMRAAGLMGSWEEALSMLDEMDKAGISANVVVYNTIIASLAKAEQ 54
            P    +  ++R A   G+W  ALS++DEM KA +  + VVYNT++A+   AEQ
Sbjct:  236 PSPKDFGNMVRFASSTGNWRLALSLIDEMHKAKVEVDSVVYNTVLAACVSAEQ 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95278.16936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A812ZQG3_9DINO8.350e-541.51Hypothetical protein n=3 Tax=Symbiodinium TaxID=29... [more]
A0A812M5Q8_SYMPI8.370e-541.51Hypothetical protein n=4 Tax=Symbiodinium TaxID=29... [more]
A0A1Q9ERA9_SYMMI8.380e-541.51Pentatricopeptide repeat-containing protein n=1 Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 5..39
e-value: 7.1E-9
score: 33.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 2..51
e-value: 7.8E-9
score: 35.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 3..37
score: 10.512
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 38..55
score: 5.974
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..55
e-value: 4.7E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95278contigH-elongata_contig95278:1955..2119 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95278.16936.1mRNA_H-elongata_contig95278.16936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95278 1950..2119 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95278.16936.1 ID=prot_H-elongata_contig95278.16936.1|Name=mRNA_H-elongata_contig95278.16936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MPDHYTYACLMRAAGLMGSWEEALSMLDEMDKAGISANVVVYNTIIASLA
KAEQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf