prot_H-elongata_contig9496.16907.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9496.16907.1
Unique Nameprot_H-elongata_contig9496.16907.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length310
Homology
BLAST of mRNA_H-elongata_contig9496.16907.1 vs. uniprot
Match: A0A6H5KYL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL0_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 3.390e-143
Identity = 221/314 (70.38%), Postives = 249/314 (79.30%), Query Frame = 0
Query:    2 SGLLPQLEKVTLGDGTTSYVRNPGRGPGRDLFTAFKRNRCARLKVLWLQRLDLWDDLDSLAVALCPEYCPVLEELFLDLALDTDDVIRLAKCLYKFPKCLKTLGVLAVAIKDRTTEGLFMNTDPTPALQMLADALANHPRPHLQCLDISVHFEPP-DPTYPTEPLTQSAPFEPRMTAAPIMSLLKTGKLTGLKHVQLSGCSLDDEGLLLACQSAANVKGIQTLDLSSNRLSKEGATQLAKTLWRCRSLHEIVLEESVEEKDAEEVTSVFKEYMPWATVRVDDRESRRNLTRRATAA---QGQLDDA-DDDQGAL 310
            SGLLPQLEKVTLGDGTTSYVR+PGRGPGRDLF AF++  C +L+VLWLQRLDLWDDLD+LA AL P +CPVLEELFLDLALDTDDV RLA CL+KFPK LKTLGVLAVAIK+RT +G F   DP PALQ LADAL  HPRP LQCLDIS+H+EP  +   P +   Q  PF+ R    PI+ LLK+GKLTG+KHVQLS CSLDD GL +AC++ A + GIQTLD+SSN+LS  GA  LAK LWRCRSLHEIVLEESV   DA  V++VFKEYMPWATVRVDDR+ R+NL RR  AA   QGQ  DA  DDQGA 
Sbjct:   16 SGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCVKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDAAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAHDAVADDQGAF 329          
BLAST of mRNA_H-elongata_contig9496.16907.1 vs. uniprot
Match: D7FZG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG4_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 1.190e-136
Identity = 217/313 (69.33%), Postives = 246/313 (78.59%), Query Frame = 0
Query:    3 GLLPQLEKVTLGDGTTSYVRNPGRGPGRDLFTAFKRNRCARLKVLWLQRLDLWDDLDSLAVALCPEYCPVLEELFLDLALDTDDVIRLAKCLYKFPKCLKTLGVLAVAIKDRTTEGLFMNTDPTPALQMLADALANHPRPHLQCLDISVHFEPP-DPTYPTEPLTQSAPFEPRMTAAPIMSLLKTGKLTGLKHVQLSGCSLDDEGLLLACQSAANVKGIQTLDLSSNRLSKEGATQLAKTLWRCRSLHEIVLEESVEEKDAEEVTSVFKEYMPWATVRVDDRESRRNLTRRATAA---QGQLDDA-DDDQGAL 310
            G L +LEKVTLGDGTTSYVR+PGRGPGRDLF AF++  CA+L+VLWLQRLDLWDDLD+LA AL P +CPVLEELFLDLALDTDDV RLA CL+KFPK LKTLGVLAVAIK+RT +G F   DP PALQ LADAL  HPRP LQCLDIS+H+EP  +   P +   Q  PF+ R    PI+ LLK+GKLTG+KHVQLS CSLDD GL +AC++ A + GIQTLD+SSN+LS  GA  LAK LWRCRSLHEIVLEESV   D   V++VFKEYMPWATVRVDDR+ R+NL RR  AA   QGQ  DA  DDQGA 
Sbjct:  234 GALTKLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCAKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTEDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAYDALADDQGAF 546          
BLAST of mRNA_H-elongata_contig9496.16907.1 vs. uniprot
Match: A0A835Z7K9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.420e-41
Identity = 97/263 (36.88%), Postives = 146/263 (55.51%), Query Frame = 0
Query:    3 GLLPQLEKVTLGDGTTSYVRNPGRGPGRDLFTAFKRNRCARLKVLWLQRLDLWDDLDSLAVALC-PEYCPVLEELFLDLALDTDDVIRLAKCLYKFPKCLKTLGVLAVAIKDRTTEGLFMNTDPTPALQMLADALANHPRPHLQCLDISVHFEP-PDPTYPTEPLTQSAPFEP-----RMTAAPIMSLLKTGKLTGLKHVQLSGCSLDDEGLLLACQSAANVKGIQTLDLSSNRLSKEGATQLAKTLWRC-RSLHEIVLEESV 257
            G+L +LE +T+G GT++Y R P +GPG+DL  A  ++    L +LWLQRLD+WDD + +  AL  P  CP L +L+LDL LD +D   LA  L+  P  LKTLG++ + I  R  +G F    P   ++++A A+  HPR  L+C+D+ +H+E  PD     EP+  + P  P     R  A P++  L+      L H+QL  C L  +       +AA +  +QTLD+S N +S+    +L   L      ++EI+ EE V
Sbjct:  318 GVLQRLESLTIGGGTSAYAR-PAKGPGKDLAAAITKHGAPNLSLLWLQRLDIWDDFEGVFRALGDPALCPSLRQLYLDLTLDIEDSKALAAALHLCPPSLKTLGMMVMGITARDDQGNFKRCSPEAGVEVIAKAMLAHPRDDLECVDLCLHYEDAPDDNEEPEPIDPAHPPPPPGLSQRRDAVPLLEALRGAAAPRLLHLQLPNCRLTGKAFSEVLSTAAALPRLQTLDISGNEMSEVLVEELVAALTTSVPHVYEIMAEECV 579          
BLAST of mRNA_H-elongata_contig9496.16907.1 vs. uniprot
Match: A0A835YQN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.640e-35
Identity = 82/207 (39.61%), Postives = 117/207 (56.52%), Query Frame = 0
Query:    3 GLLPQLEKVTLGDGTTSYVRNPGRGPGRDLFTAFKRNRCARLKVLWLQRLDLWDDLDSLAVALCPE-YCPVLEELFLDLALDTDDVIRLAKCLYKFPKCLKTLGVLAVAIKDRTTEGLFMNTDPTPALQMLADALANHPRPHLQCLDISVHFEPP-----DPTYPTE-PLTQSAPFEPRMTAAPIMSLLKTGKLTGLKHVQLSGCSL 202
            GLL +LE +T+G GT+ Y R P  G G++L TA + +    L++LWLQR D+WDD   +  AL     CP L+EL++D  LD DD + LA  L   P CLKTLG++ +A+++R   G F    P PA+  +A AL    RP L C+D+ +HFEPP     D  Y  E P    A   P   + P++   + G +  ++H+QL  C L
Sbjct:  420 GLLARLECLTMGGGTSVYAR-PKIGAGQELATALREHGAPNLRLLWLQRFDVWDDFPGVFSALSDRTLCPALKELYIDATLDHDDTLALAAALPLVPTCLKTLGMMVMALRERDHLGYFKRVSPVPAVTAIATALLEAQRPQLGCVDLCLHFEPPQEGETDEWYSDELPPPPPADKSPVDASIPLLRAFQAGAVPNMRHLQLPNCRL 625          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9496.16907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KYL0_9PHAE3.390e-14370.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZG4_ECTSI1.190e-13669.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7K9_9STRA1.420e-4136.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQN0_9STRA3.640e-3539.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 286..306
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 188..265
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 35..253
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..272
e-value: 1.1E-18
score: 68.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 221..239
e-value: 0.012
score: 15.6
coord: 190..207
e-value: 0.13
score: 12.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9496contigH-elongata_contig9496:3883..8827 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9496.16907.1mRNA_H-elongata_contig9496.16907.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9496 3883..8827 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9496.16907.1 ID=prot_H-elongata_contig9496.16907.1|Name=mRNA_H-elongata_contig9496.16907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=310bp
MSGLLPQLEKVTLGDGTTSYVRNPGRGPGRDLFTAFKRNRCARLKVLWLQ
RLDLWDDLDSLAVALCPEYCPVLEELFLDLALDTDDVIRLAKCLYKFPKC
LKTLGVLAVAIKDRTTEGLFMNTDPTPALQMLADALANHPRPHLQCLDIS
VHFEPPDPTYPTEPLTQSAPFEPRMTAAPIMSLLKTGKLTGLKHVQLSGC
SLDDEGLLLACQSAANVKGIQTLDLSSNRLSKEGATQLAKTLWRCRSLHE
IVLEESVEEKDAEEVTSVFKEYMPWATVRVDDRESRRNLTRRATAAQGQL
DDADDDQGAL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt