prot_H-elongata_contig94220.16850.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig94220.16850.1
Unique Nameprot_H-elongata_contig94220.16850.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
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BLAST of mRNA_H-elongata_contig94220.16850.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.070e-19
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 0 
Query:    1 QILEAHGWKLRHLDISDCPLVTDATLKAVGERCGVLESLSLGMCPLVSTGAIQEV 55
            QILEA G +LRHLDISDC  +TDATLKA+GERCGVLESL+LG+CPL+++GAIQE+
Sbjct:  512 QILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEI 566
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BLAST of mRNA_H-elongata_contig94220.16850.1 vs. uniprot
Match: A0A367K888_RHIAZ (SCF ubiquitin ligase complex subunit n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367K888_RHIAZ)

HSP 1 Score: 48.5 bits (114), Expect = 6.460e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    1 QILEAHGWKLRHLDISDCPLVTDATLKAVGERCGV-LESLSLGMCPLVSTGAIQEVR 56
            +++   G  +RHL I+DCPL+T AT++AVG  CG  LES+ L   P   T  ++ V+
Sbjct:  232 RLMTITGKSIRHLRINDCPLLTGATIQAVGRYCGPKLESIDLSRLPFKHTDIVKLVK 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94220.16850.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHT5_ECTSI1.070e-1976.36Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A367K888_RHIAZ6.460e-542.11SCF ubiquitin ligase complex subunit n=5 Tax=Rhizo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 33..58
e-value: 120.0
score: 6.2
coord: 7..32
e-value: 0.037
score: 23.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..62
e-value: 3.5E-9
score: 38.0
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 9..20
e-value: 0.019
score: 15.4
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94220contigH-elongata_contig94220:1889..2080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94220.16850.1mRNA_H-elongata_contig94220.16850.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig94220 1889..2080 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig94220.16850.1 ID=prot_H-elongata_contig94220.16850.1|Name=mRNA_H-elongata_contig94220.16850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
QILEAHGWKLRHLDISDCPLVTDATLKAVGERCGVLESLSLGMCPLVSTG
AIQEVRVKRPPCPC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt