prot_H-elongata_contig91983.16650.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig91983.16650.1
Unique Nameprot_H-elongata_contig91983.16650.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length41
Homology
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BLAST of mRNA_H-elongata_contig91983.16650.1 vs. uniprot
Match: D7G8J6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J6_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.670e-10
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:    1 MDILASWGADDVHHNVLVWNVETLKVIHVVSGHSGPIKDVC 41
            MD+L SWG D+ +H ++VW+V+ L V+HV+ GH  P+KD+C
Sbjct:  182 MDVLTSWGVDEFNHEIIVWDVDKLTVLHVLDGHCEPVKDIC 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91983.16650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8J6_ECTSI5.670e-1051.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91983contigH-elongata_contig91983:188..310 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91983.16650.1mRNA_H-elongata_contig91983.16650.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig91983 188..310 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig91983.16650.1 ID=prot_H-elongata_contig91983.16650.1|Name=mRNA_H-elongata_contig91983.16650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MDILASWGADDVHHNVLVWNVETLKVIHVVSGHSGPIKDVC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf