prot_H-elongata_contig91956.16647.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig91956.16647.1
Unique Nameprot_H-elongata_contig91956.16647.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: D7FQZ1_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ1_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 9.700e-35
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0
Query:   12 FISTASCHSPFPDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            F + A+ H    DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ
Sbjct:  184 FRNGATRHLVSSDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 255          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: S8DJL6_9LAMI (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DJL6_9LAMI)

HSP 1 Score: 118 bits (296), Expect = 2.900e-33
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0
Query:   24 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            DLFTRGIDIQ+VNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLITYEDR NL+RIEQ
Sbjct:    2 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 61          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A7J9IWX9_9ROSI (Helicase C-terminal domain-containing protein n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9IWX9_9ROSI)

HSP 1 Score: 119 bits (298), Expect = 3.670e-33
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0
Query:   11 PFISTASCHSPFPDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            P+I          DLFTRGIDIQ+VNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLITYEDR NL+RIEQ
Sbjct:   21 PYIINLMDELTLKDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 93          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A7S2I9F1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I9F1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.010e-33
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0
Query:   12 FISTASCHSPFPDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            F + A+ H    DLFTRGIDIQSVNVVINFDFPKN+ETYLHRIGRSGRFGHLGLA+NLITY+DRH L R+EQ
Sbjct:   44 FRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAVNLITYDDRHTLRRVEQ 115          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A835ZBU9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.280e-32
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0
Query:   12 FISTASCHSPFPDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            F + A+ H    DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGR+GHLGLAINLITY+DRHNLFRIEQ
Sbjct:  338 FRNGATRHLVCSDLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITYDDRHNLFRIEQ 409          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A0C9RNZ7_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_7245_741 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RNZ7_9SPER)

HSP 1 Score: 117 bits (293), Expect = 1.630e-32
Identity = 53/60 (88.33%), Postives = 59/60 (98.33%), Query Frame = 0
Query:   24 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            DLFTRGIDIQ+VNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLITYEDR NL++IEQ
Sbjct:   25 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQ 84          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A452YJB9_AEGTS (Helicase C-terminal domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YJB9_AEGTS)

HSP 1 Score: 116 bits (291), Expect = 1.780e-32
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 0
Query:   24 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            DLFTRGIDIQ+VNVVINFDFPK AETYLHR+GRSGRFGHLGLA+NLITYEDR N++RIEQ
Sbjct:    4 DLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNMYRIEQ 63          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A438BZA0_VITVI (DEAD-box ATP-dependent RNA helicase 8 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZA0_VITVI)

HSP 1 Score: 118 bits (296), Expect = 2.120e-32
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0
Query:   24 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            DLFTRGIDIQ+VNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLITYEDR NL+RIEQ
Sbjct:   68 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 127          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: UPI000C1D59D2 (DEAD-box ATP-dependent RNA helicase 8-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D59D2)

HSP 1 Score: 117 bits (293), Expect = 2.180e-32
Identity = 53/60 (88.33%), Postives = 59/60 (98.33%), Query Frame = 0
Query:   24 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            DLFTRGIDIQ+VNVVINFDFPKN+ETYLHR+GRSGRFGHLG+A+NLITYEDR NL+RIEQ
Sbjct:   35 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGVAVNLITYEDRFNLYRIEQ 94          
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Match: A0A7J9IXW7_9ROSI (Helicase C-terminal domain-containing protein n=3 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9IXW7_9ROSI)

HSP 1 Score: 118 bits (296), Expect = 2.740e-32
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0
Query:   24 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ 83
            DLFTRGIDIQ+VNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLITYEDR NL+RIEQ
Sbjct:   79 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91956.16647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ1_ECTSI9.700e-3587.50DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
S8DJL6_9LAMI2.900e-3390.00Helicase C-terminal domain-containing protein (Fra... [more]
A0A7J9IWX9_9ROSI3.670e-3376.71Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S2I9F1_9STRA7.010e-3379.17Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A835ZBU9_9STRA1.280e-3284.72P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0C9RNZ7_9SPER1.630e-3288.33TSA: Wollemia nobilis Ref_Wollemi_Transcript_7245_... [more]
A0A452YJB9_AEGTS1.780e-3288.33Helicase C-terminal domain-containing protein n=1 ... [more]
A0A438BZA0_VITVI2.120e-3290.00DEAD-box ATP-dependent RNA helicase 8 n=1 Tax=Viti... [more]
UPI000C1D59D22.180e-3288.33DEAD-box ATP-dependent RNA helicase 8-like n=1 Tax... [more]
A0A7J9IXW7_9ROSI2.740e-3290.00Helicase C-terminal domain-containing protein n=3 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 2..61
e-value: 0.0061
score: 25.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 24..61
e-value: 2.1E-12
score: 47.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..83
score: 11.171
NoneNo IPR availableGENE3D3.40.50.300coord: 13..83
e-value: 1.9E-21
score: 78.0
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 24..80
NoneNo IPR availablePANTHERPTHR24031:SF661coord: 24..80
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 24..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91956contigH-elongata_contig91956:2243..2491 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91956.16647.1mRNA_H-elongata_contig91956.16647.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig91956 2243..2491 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig91956.16647.1 ID=prot_H-elongata_contig91956.16647.1|Name=mRNA_H-elongata_contig91956.16647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
RRKRAGVAPTPFISTASCHSPFPDLFTRGIDIQSVNVVINFDFPKNAETY
LHRIGRSGRFGHLGLAINLITYEDRHNLFRIEQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase