prot_H-elongata_contig911.16581.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig911.16581.1
Unique Nameprot_H-elongata_contig911.16581.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length263
Homology
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 2.830e-85
Identity = 128/210 (60.95%), Postives = 161/210 (76.67%), Query Frame = 0
Query:   32 TKLSTPFPFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            TKLST  P  K P  VESPP++V GV +S+YR+ WE+AM+ EFDGH  TG FS +   P+GR+PVSSKW F++KT+K+GKI K KARL  RGF++I +VDY HSSSPC  S+S+KL+LAVANE+SL L H+DV QA+  A LDE+V+++   GCGEKS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK  D+  V
Sbjct:   99 TKLSTESPRGKRPSDVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVV 308          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 7.850e-82
Identity = 132/223 (59.19%), Postives = 166/223 (74.44%), Query Frame = 0
Query:   19 DSDCALAMAVEQQTKLSTPFPFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            +S  A A A+   T+LST  P  K P  VESPP++V GV +S+YR+ WE+AM+ EFDGH  TG FS +   P+GR+PVSSK  F++KT+KEGKI K KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+SL L H+DV QA+  A LDE+V+++   GCGEKS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK  D+  V
Sbjct:   87 NSPDAFARALAS-TELSTESPIGKRPSDVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDVTPEGRRPVSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVV 308          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.220e-79
Identity = 123/203 (60.59%), Postives = 153/203 (75.37%), Query Frame = 0
Query:   39 PFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            P  K P  VE PP++V GV +S+YR+ WE+AM+ EF GH  T  FS I   P+ R+PVSSKWCF +KT+KEGKI K KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEE++++   GCGEKS K  + E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct:   66 PIGKRPSDVEPPPMTVAGVAKSVYREGWEQAMREEFKGHLGTRTFSFIDGAPKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 268          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.550e-79
Identity = 126/224 (56.25%), Postives = 161/224 (71.88%), Query Frame = 0
Query:   42 KHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASVSTWTTCWLNG---WKTTASHARIS 262
            K    VE+ P+++ GV +S+YR+ WE+AM+ EF+GH  TG FS +   P+GR+PVSSKWCFS+KT+KEG+I   KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE     W      G   W +T S   +S
Sbjct:  127 KRSSDVEATPMTLAGVVKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVGGEWPVREAIGSMMWVSTFSRPDVS 350          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.750e-79
Identity = 125/203 (61.58%), Postives = 157/203 (77.34%), Query Frame = 0
Query:   39 PFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            P  K P  VE+PP++V GV +S+YR+ WE+AM+ EF+GH  TG FS +   P+GR+PVSSKWCFS+KT+KEGKI   KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS +  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct:  279 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 481          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 6.250e-78
Identity = 124/203 (61.08%), Postives = 157/203 (77.34%), Query Frame = 0
Query:   39 PFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            P  K P  VE+PP++V GV +S+YR+ WE+AM+ EF+GH  TG FS +   P+GR+PVSSKWCF++KT++EGKI  LKARL  RG +QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct:  386 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFNWKTNQEGKIDTLKARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 588          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 9.840e-78
Identity = 126/203 (62.07%), Postives = 157/203 (77.34%), Query Frame = 0
Query:   39 PFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            P  K P  VE+PP++V GV +S+YR+ WE+AM+ EF+GH  TG FS +   P+GR+PVSSKWCFS+KT+KEGKI   KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct:  725 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 927          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 1.690e-77
Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 0
Query:   36 TPFPFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            T FP  K P  VE PP++V GV +S+YR+  E+AM+ EF+GH  TG FS +   P+GR+PVSSKWCFS+KT+KEGKI   KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct:  522 TEFPIGKRPSDVEPPPMTVAGVAKSVYRERLEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 727          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 1.910e-77
Identity = 126/203 (62.07%), Postives = 157/203 (77.34%), Query Frame = 0
Query:   39 PFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            P  K P  VE+PP++V GV +S+YR+ WE+AM+ EF+GH  TG FS +   P+GR+PVSSKWCFS+KT+KEGKI   KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct: 1104 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 1306          
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 1.950e-77
Identity = 126/203 (62.07%), Postives = 157/203 (77.34%), Query Frame = 0
Query:   39 PFEKHPGKVESPPLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKWCFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILAVANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIYGLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASV 241
            P  K P  VE+PP++V GV +S+YR+ WE+AM+ EF+GH  TG FS +   P+GR+PVSSKWCFS+KT+KEGKI   KARL  RGF+QI +VDY HSSSPC  S+S+KL+LAVANE+ + L H+DV QAY  A+LDEEV++K   GCG+KS K  K E+AIYGLKQSGR+ G+  ADTL+EN FEQCKAD C+FRK VDE  V
Sbjct: 1267 PIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVV 1469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig911.16581.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFJ3_9PHAE2.830e-8560.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE7.850e-8259.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVP5_9PHAE2.220e-7960.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8S0_9PHAE2.550e-7956.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE2.750e-7961.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE6.250e-7861.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE9.840e-7862.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE1.690e-7761.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.910e-7762.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.950e-7762.07Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 88..239
e-value: 9.3E-33
score: 113.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 58..232
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 58..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig911contigH-elongata_contig911:16673..17461 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig911.16581.1mRNA_H-elongata_contig911.16581.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig911 14285..17627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig911.16581.1 ID=prot_H-elongata_contig911.16581.1|Name=mRNA_H-elongata_contig911.16581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp
MEWFEENGPPLELREEEQDSDCALAMAVEQQTKLSTPFPFEKHPGKVESP
PLSVTGVERSLYRKSWEKAMQSEFDGHTQTGPFSLIYRVPQGRKPVSSKW
CFSYKTDKEGKIAKLKARLNVRGFTQIRDVDYSHSSSPCLWSSSVKLILA
VANERSLPLRHFDVAQAYIFASLDEEVYIKFCGGCGEKSTKTTKLEKAIY
GLKQSGRKCGHLCADTLMENAFEQCKADLCIFRKKVDEASVSTWTTCWLN
GWKTTASHARIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like