prot_H-elongata_contig8479.16074.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8479.16074.1
Unique Nameprot_H-elongata_contig8479.16074.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length206
Homology
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 5.450e-38
Identity = 81/203 (39.90%), Postives = 119/203 (58.62%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRF 194
            MW  T TRPDIA AVR  A +C +P   H +A + I+ Y++ T D GI +  G   GL MEV+ D+D+ +    RRSVS  ++M   G IS + RT+K   L T+EAEY +L++ + E        +FM P   +  + VFE N+G I+LA N  ++  +KH+DV+HH +R+    +++ + +V S  QHAD LTK L    F
Sbjct:  225 MWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.780e-37
Identity = 81/213 (38.03%), Postives = 117/213 (54.93%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRFYKYAKVIPNV 204
            MW  T TRPDIA AVR  A +C +P   H  A + I+ Y   T  +GI +  G   G  ++ Y D+DF +    RRSVS  ++    GA+S + RT+K   L T+EAEY AL E V          +FM P V +  + VFE N+G I+LA N  ++  +KH+DV+HH +R+  + +++ V +V S  Q AD LTK L    F  +   + N+
Sbjct:    3 MWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 215          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.020e-37
Identity = 78/203 (38.42%), Postives = 119/203 (58.62%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRF 194
            MW  T TRPDIA AVR  A +C +P   H +A + I+ Y++ T D GI +  G   GL MEV+ D+D+ +    RRSVS  ++M   G +S + RT+K   L T+EAEY +L++ + E        +F+ P   +  + V E N+G I+LA N  ++  +KH+DV+HH +R+    +++ + +V S  QHAD LTK L+   F
Sbjct:   41 MWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDF 243          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6A3VC18_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VC18_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.980e-37
Identity = 82/202 (40.59%), Postives = 120/202 (59.41%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYGGQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTEKFMEPSV-------KVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRD--ASDVQKVRVAYVRSEDQHADLLTKPLDTQR 193
            ++  T TRPD+A  V   + F +NPG  H KA I++++YL  TKD GIIY      + +E YTD+D+G+  D RRSV   ++M+    +    + ++  AL ++EAEY ALS    E     ++       +VG   V+E N+G I LA+N   + RTKHVD++HH +R+  A D+  V V YV +ED+ ADLLTK L T+R
Sbjct:   73 LYITTRTRPDVAYIVTQLSRFVENPGHQHWKAAIRVLRYLKSTKDLGIIYNSNDGKVMLEAYTDADWGSNLDDRRSVCGIMIMIGGAPVVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRAMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDI--VTVDYVGTEDRLADLLTKALGTKR 272          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.630e-37
Identity = 81/203 (39.90%), Postives = 119/203 (58.62%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRF 194
            MW  T TRPDIA AVR  A +C +P   H +A + I+ Y++ T D GI +  G   GL MEV+ D+D+ +    RRSVS  ++M   G IS + RT+K   L T+EAEY +L++ + E        +FM P   +  + VFE N+G I+LA N  ++  +KH+DV+HH +R+    +++ + +V S  QHAD LTK L    F
Sbjct:  399 MWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6A3PPB9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PPB9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.350e-37
Identity = 79/202 (39.11%), Postives = 121/202 (59.90%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYGGQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTEKFMEPSV-------KVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRD--ASDVQKVRVAYVRSEDQHADLLTKPLDTQR 193
            ++  T TRPD+A  V   + F +NPG  H KA I++++YL  TKD GII+      + +E YTD+D+G+  D RRSV   ++M+    +   L+ ++  AL ++EAEY ALS    E     ++       +VG   V+E N+G I LA++   + RTKHVD++HH +R+  A D+  V V Y+ +ED+ ADLLTK + T+R
Sbjct:   14 LYITTRTRPDVAYIVTQLSRFVENPGHQHWKAAIRVLRYLKSTKDLGIIFNSNDGKVMLEAYTDADWGSNLDDRRSVCGIMIMIGGAPVVFKLKYQRTVALSSAEAEYMALSLCTQEVLWTRAMLKDLGHEQVGATQVWEDNQGAIALASDAGYNARTKHVDIRHHFIRENVARDI--VTVDYIGTEDRLADLLTKAVGTKR 213          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.010e-36
Identity = 74/213 (34.74%), Postives = 122/213 (57.28%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRFYKYAKVIPNV 204
            MW  T TRPDIA AVR  A +C +P   H KA + I+ Y+  T   GI +  G   G+ M+V+ D+D+ +    RRSVS  ++M   G ++ + RT+K   L T+EAEY A+++ + E        +FM P   +  + VFE N+G I++  N   +  +KH+DV+HH +R+  + +++ + +V ++ QHAD LTK +  + F  +   + N+
Sbjct:  163 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.240e-36
Identity = 75/213 (35.21%), Postives = 121/213 (56.81%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRFYKYAKVIPNV 204
            MW  T TRPDIA AVR  A +C +P   H KA + I+ Y+  T   GI +  G   G+ M+V+ D+D+ +    RRSVS  ++M   G ++ + RT+K   L T+EAEY A+++ + E        +FM P   +  + VFE N+G I++A N   +  +KH+DV+HH +R+  + +++ +  V +  QHAD LTK +  + F  +   + N+
Sbjct:  108 MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.450e-36
Identity = 80/202 (39.60%), Postives = 119/202 (58.91%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYG-GQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTE--------KFMEPSVKVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRDASDVQK-VRVAYVRSEDQHADLLTKPLDTQ 192
            MW  T TRPDIA AVR  A +C +P   H +A + I+ Y++ T D GI +  G   GL MEV+ D+D+ +    RRSVS  ++M   G IS + RT+K   L T+EAEY +L++ + E        +FM P   +  + VFE N+G I+LA N  ++   KH+DV+HH +R+    +K + + +V S  QHAD LT+ L ++
Sbjct:  124 MWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRALTSR 325          
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 144 bits (364), Expect = 2.420e-36
Identity = 82/202 (40.59%), Postives = 124/202 (61.39%), Query Frame = 0
Query:    1 MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIYGGQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTALCTSEAEYFALSEAVTEKFMEPSV-------KVGIVNVFEGNEGTIELATNKHASRRTKHVDVKHHMVRD--ASDVQKVRVAYVRSEDQHADLLTKPLDTQR 193
            ++  T TRPD+A  V   + F +NPG  H KA I++++YL  TK++GI+Y G +  + ME YTD+D+G+  D RRSVS  ++M+    +    + ++  AL ++EAEY ALS    E     ++       +VG   V+E N+G I LA+N   + RTKHVD++HH +R+  A D+  + V YV +EDQ AD+LTK L T+R
Sbjct: 1142 LYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDI--ILVGYVGTEDQLADMLTKALGTKR 1341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8479.16074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE5.450e-3839.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEZ8_9PHAE1.780e-3738.03Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE2.020e-3738.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3VC18_9STRA2.980e-3740.59Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A6H5KQB8_9PHAE4.630e-3739.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3PPB9_9STRA7.350e-3739.11Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6H5L4G9_9PHAE1.010e-3634.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE1.240e-3635.21Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR24_9PHAE1.450e-3639.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3H572_PHYRM2.420e-3640.59Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 4..193
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8479contigH-elongata_contig8479:8727..9368 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8479.16074.1mRNA_H-elongata_contig8479.16074.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8479 8727..9368 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8479.16074.1 ID=prot_H-elongata_contig8479.16074.1|Name=mRNA_H-elongata_contig8479.16074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MWPVTMTRPDIARAVRTGASFCKNPGPAHKKAVIKIMQYLLHTKDWGIIY
GGQSCGLFMEVYTDSDFGACWDTRRSVSDAVLMLAKGAISLYLRTKKMTA
LCTSEAEYFALSEAVTEKFMEPSVKVGIVNVFEGNEGTIELATNKHASRR
TKHVDVKHHMVRDASDVQKVRVAYVRSEDQHADLLTKPLDTQRFYKYAKV
IPNVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like