prot_H-elongata_contig82304.15886.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA) HSP 1 Score: 221 bits (564), Expect = 9.530e-64 Identity = 110/176 (62.50%), Postives = 134/176 (76.14%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASPGEVARLRFSNAASRPSSAASGGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGF HASV+KT +DLKD+ K S V ++RF+N +AA G GGKL+ENL DGLP +G+ V GDPLYC ++ T+K GKHKESE A VETVRA+G GI+K +++ S+TLRF RNP+IGDKFSSRHGQKGVMSILWP DMPFTE+G++PD+IINPHAFPSRM I
Sbjct: 780 RGFAHASVVKTIKIDLKDLLTKSDSKTMVGKMRFTN------TAADGKGGKLYENLDNDGLPRIGACVKEGDPLYCAIDLRTNKTKTGKHKESEMAYVETVRAVGGAGINKEAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRMTI 949
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A7S1XVH2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVH2_9STRA) HSP 1 Score: 201 bits (511), Expect = 3.160e-61 Identity = 105/185 (56.76%), Postives = 133/185 (71.89%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASPGEVAR--LRFSNAASRPSSAAS---GGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALG----REGIDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGFGHASV K +V+L+D K + + R LRF N P+ + GG K+++NL DGLPAVG+WV GDPLYC ++ ++ + GKHKE+E+AC++ VR LG R G ++ RVS+TLRF RNP+IGDKFSSRHGQKGVMSILWP EDMPF+E+G++PDVIINPHAFPSRM I
Sbjct: 106 RGFGHASVYKAKIVNLEDEEKKGSQNRDGGRPSLRFGNLRRTPAEPGNPLIGGEQKIYDNLDADGLPAVGTWVQEGDPLYCTIDSVSGEAHAGKHKETERACIQDVRLLGPADQRSGNEEC--RRVSMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQEDMPFSESGITPDVIINPHAFPSRMTI 288
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA) HSP 1 Score: 213 bits (543), Expect = 7.370e-61 Identity = 112/187 (59.89%), Postives = 133/187 (71.12%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASP--GEVARLRFSNAASRPSSAASGGGG------KLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKAPLSR---VSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGFGHASV KT VD+KD A + S G+ R++F N R + S GG L+ NLG DGLP VG+WV+ GDP+YCVV+ELT + GKHKE EKAC++ VR LG+ K ++R VSITLR RNPVIGDKFSSRHGQKGV+SILWP DMPF+E+G+SPDVIINPHAFPSRM I
Sbjct: 830 RGFGHASVYKTMKVDIKDEAERAGSDTKGDKPRMKFGNKTVRRAKDPSAAGGIGTTDEVLYPNLGEDGLPEVGTWVDEGDPIYCVVDELTGRTRPGKHKEKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTI 1016
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK) HSP 1 Score: 198 bits (504), Expect = 3.310e-58 Identity = 105/177 (59.32%), Postives = 128/177 (72.32%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASPGEVARLRFSNAASRPSSAASGGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREG-IDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGF HA+V KT DL G A G V RF+N A GG K+ +LG DGLP VG+WV PGDPL C V++L+ + TV KHK++E A V+ VR LG EG + +A L+RVS+TLR+ RNP+IGDKFSSRHGQKGV+SILWP E+MPFTE+G++PDVIINPHAFPSRM I
Sbjct: 111 RGFAHAAVYKTKTYDLLAERGGSAKRGHV---RFANRAPGDKE----GGAKIEPSLGEDGLPHVGAWVKPGDPLLCHVDDLSGEKTVVKHKDTETAVVQDVRLLGAEGGLPQADLTRVSLTLRYPRNPIIGDKFSSRHGQKGVLSILWPQENMPFTESGMTPDVIINPHAFPSRMTI 280
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA) HSP 1 Score: 197 bits (500), Expect = 7.680e-57 Identity = 103/189 (54.50%), Postives = 130/189 (68.78%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLAS--PGEVARLRFSNAASRPSSAASGGGG-----------KLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGF HAS+ KT +++L D K AS G LRF N +RP++ A+ K++E L +DGLP VG W+ DPLYC++N + V KHK+ E+ACV+T+R LG +G +K L RVS+TLR RNP+IGDKFSSRHGQKGVMS+LWP EDMPF+E+G+SPDVIINPHAFPSRM I
Sbjct: 186 RGFAHASIYKTKIINLDDEEEKAASLEDGTKPTLRFGN--TRPTNFATEVSPSVAIADVSPVRKIYEELDFDGLPHVGQWLEQDDPLYCLLNTTNGESHVTKHKDVERACVQTIRLLGSDGKNKDKLRRVSVTLRIPRNPIIGDKFSSRHGQKGVMSVLWPQEDMPFSESGISPDVIINPHAFPSRMTI 372
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.860e-56 Identity = 109/200 (54.50%), Postives = 129/200 (64.50%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVA---GKLASPGEVARLRFSNAASRPSSAASGGG----------GKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKAPLSR-----------VSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGFGHASV KT VDL++ A G + GE +R++F N + ++ S G G L+ N+G DGLP VG+WV GDPLYCV++ELT KHKE E ACV++VR LG R VSITLR RNPVIGDKFSSRHGQKGV+SILWP EDMPF+E+G+SPDVIINPHAFPSRM I
Sbjct: 856 RGFGHASVYKTMQVDLREEAERRGSSTASGEKSRVKFGNKTIKKFASGSAAGSSSKGSSITEGFLYPNIGEDGLPEVGTWVKEGDPLYCVIDELTGADFAAKHKEKESACVQSVRLLGEHISHSTTTQRQKMAPSQQDQKVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTI 1055
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A1E7FFI8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFI8_9STRA) HSP 1 Score: 199 bits (506), Expect = 7.130e-56 Identity = 101/176 (57.39%), Postives = 127/176 (72.16%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASPGEVARLRFSNAASRPSSAASGGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGFGHASV KT +DL++ A A ++RF+N +R G +H L DGLP +GS+V+ DPLYCV+NE+ +K VGKHKESE+A V+++R G E D ++ SITLRF RNPVIGDKFSSRHGQKGV+SILWP +DMPF+E+G+SPD+IINPHAFPSRM I
Sbjct: 825 RGFGHASVYKTIEIDLQEEAKMAAQSSTRPQVRFANKVNRD-------GQLVHNKLEIDGLPEIGSYVDKDDPLYCVLNEVENKDRVGKHKESERAYVQSIRMFGSEKEDSQE-NKASITLRFNRNPVIGDKFSSRHGQKGVLSILWPQQDMPFSESGISPDIIINPHAFPSRMTI 992
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA) HSP 1 Score: 194 bits (493), Expect = 4.070e-54 Identity = 110/213 (51.64%), Postives = 125/213 (58.69%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASPGE------VARLRFSNAASRPS-----------------SAASGGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALG--------------REGIDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGFGHASV KT VDL+D A + + G ARL+FSN +P LH L DGLP G WV+ GD LYCVV+ LT K VG+HKE EKACV+ VR LG R P ++S+TLRF RNPVIGDKFSSRHGQKGVMSILWP DMPF+E+G+SPDVIINPHAFPSRM I
Sbjct: 852 RGFGHASVYKTMTVDLRDKAEHMGAKGGGCDGSGEARLKFSNILKKPEXXXXXXXXXXXXXXXXXKVEKNAAPWLHRTLDEDGLPMPGEWVSEGDALYCVVDTLTGKDNVGRHKEKEKACVQCVRKLGSASAGQSMNSKSGGRGSSSAVPDEKISLTLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRMTI 1064
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: A0A448ZGM0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGM0_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.020e-53 Identity = 101/176 (57.39%), Postives = 124/176 (70.45%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLKDVAGKLASPGEVARLRFSNAASRPSSAASGGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKAPLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RGFGHASV KT VDL++ A A +RFSN +R G H L DGLP +GS+V GDPLYCV++++ ++ VGKHKE+E+A V++VR G E D ++ SITLRF RNPVI DKFSSRHGQKGV+SILWP +DMPF+E+G+SPDVIINPHAFPSRM I
Sbjct: 841 RGFGHASVYKTIEVDLQEEAKMAAQSTTRPNVRFSNKVNRD-------GQLYHPKLEIDGLPEIGSYVEKGDPLYCVLDDVENRDRVGKHKEAERAYVQSVRMFGSEKGDSQE-NKASITLRFNRNPVIXDKFSSRHGQKGVLSILWPQQDMPFSESGISPDVIINPHAFPSRMTI 1008
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA) HSP 1 Score: 188 bits (478), Expect = 4.210e-52 Identity = 107/189 (56.61%), Postives = 120/189 (63.49%), Query Frame = 0
Query: 3 RGFGHASVLKTFVVDLK-DVAG----------KLASPGEVARLRFSNAASRPSSAASGGGGKLHENLGWDGLPAVGSWVNPGDPLYCVVNELTSKVTVGKHKESEKACVETVRALGREGIDKA--PLSRVSITLRFQRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTEAGLSPDVIINPHAFPSRMVI 178
RG A V KT V L+ D+ G L +P VA+ +F P L E L DGLP VG+WV GD LY V+ LT +V VGKHKESE ACVE VR LG EG A PL VSITLRF R P+IGDKFSSRHGQKGV+SILWP EDMPFTE+G+SPD+IINPHAFPSRM I
Sbjct: 832 RGMAAADVYKTKSVSLRRDMRGGPKRPDLRFSNLRTPAVVAKRQFPGRVGDP----------LFEKLEADGLPVVGTWVKEGDVLYSAVDSLTGEVEVGKHKESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRMTI 1010 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82304.15886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig82304.15886.1 ID=prot_H-elongata_contig82304.15886.1|Name=mRNA_H-elongata_contig82304.15886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bpback to top |