prot_H-elongata_contig80971.15755.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80971.15755.1
Unique Nameprot_H-elongata_contig80971.15755.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length299
Homology
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.500e-34
Identity = 71/110 (64.55%), Postives = 82/110 (74.55%), Query Frame = 0
Query:  201 PSFKLPVVSAAGAGEAGRSTKNDPTFMETFFQKSRLHYIGVG-----------------PGARQPVFGGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            P F+LP + AAG G  GRSTK+DP FM+TFF+ SRLH+IGVG                 PGA QPVFGG LGRG+TRV+LHVDMDCFFVSVLV+NRPEL+D+PVAVAHN 
Sbjct:  574 PPFELPEMGAAGEG--GRSTKDDPAFMKTFFRNSRLHFIGVGRAHAVKVVNAGLAARALPGATQPVFGGRLGRGETRVILHVDMDCFFVSVLVKNRPELKDKPVAVAHNA 681          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.270e-31
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 0
Query:  213 AGEAGRSTKNDPTFMETFFQKSRLHYIGVG-----------------PGARQPVFGGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            AGE GRSTK+DP FM+TFF+ SRLH+IGVG                 PGA Q VFGG LGRG+TRV+LHVDMDCFFVSVLV+NRPEL+D+PVAVAHN 
Sbjct:  311 AGEGGRSTKDDPAFMKTFFRNSRLHFIGVGRAHAVKVVNAGLAARALPGATQAVFGGRLGRGETRVILHVDMDCFFVSVLVKNRPELKDKPVAVAHNA 408          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A7S3XKY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKY2_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-15
Identity = 47/87 (54.02%), Postives = 56/87 (64.37%), Query Frame = 0
Query:  218 RSTKNDPT-FMETFFQKSRLHYIG-------VGPGARQPVFG---GPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            RSTK+DP  F+ETFF+ SRLH+IG            RQ   G   G L     R +LHVDMDCFFVSV+VR RP+L  +PVAVAH+G
Sbjct:   29 RSTKDDPDGFIETFFKWSRLHHIGHWKMHYQKRAANRQRWTGVDLGALRAAHERTILHVDMDCFFVSVVVRGRPDLEGKPVAVAHSG 115          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A835SP66_CHLIN (DNA polymerase kappa n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SP66_CHLIN)

HSP 1 Score: 87.4 bits (215), Expect = 1.990e-15
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 0
Query:  218 RSTKNDPTFMETFFQKSRLHYIG------------VGPGARQPVFGGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            RST+ DP FMETFF+ SRLH+IG            V   A QP    P G+G  RV+LHVDMDCFF SV    RPEL  RP+AV H+ 
Sbjct:  526 RSTRTDPRFMETFFRNSRLHFIGTWRTRIEALMAEVEAAAPQPA---PSGKGTERVILHVDMDCFFASVAAVGRPELAGRPLAVCHSN 610          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A836B3W7_9CHLO (DNA polymerase kappa n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B3W7_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 2.000e-15
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 0
Query:  218 RSTKNDPTFMETFFQKSRLHYIG------------VGPGARQPVFGGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            RST+ DP FMETFF+ SRLH+IG            V   A QP    PL +G  RV+LHVDMDCFF SV    RPEL  RP+AV H+ 
Sbjct:  564 RSTRTDPRFMETFFRNSRLHFIGTWRTRIEALMAEVEAAAPQPA---PLAKGGERVILHVDMDCFFASVAAVGRPELAGRPLAVCHSN 648          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A8IYH8_CHLRE (Deoxycytidyl transferase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IYH8_CHLRE)

HSP 1 Score: 86.7 bits (213), Expect = 2.900e-15
Identity = 47/88 (53.41%), Postives = 53/88 (60.23%), Query Frame = 0
Query:  218 RSTKNDPTFMETFFQKSRLHYIG------------VGPGARQPVFGGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            RST+ DP FMETFF+ SRLH+IG            V   A QP+   P  RG  RVVLHVDMDCFF SV    RPEL  RP+AV H+ 
Sbjct:  234 RSTRTDPRFMETFFRNSRLHFIGTWRTRIEALMAEVEAAAPQPL--PPAARGAERVVLHVDMDCFFASVAAVGRPELAGRPLAVCHSN 319          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A2K3D660_CHLRE (DNA polymerase kappa n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D660_CHLRE)

HSP 1 Score: 86.7 bits (213), Expect = 3.640e-15
Identity = 47/88 (53.41%), Postives = 53/88 (60.23%), Query Frame = 0
Query:  218 RSTKNDPTFMETFFQKSRLHYIG------------VGPGARQPVFGGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            RST+ DP FMETFF+ SRLH+IG            V   A QP+   P  RG  RVVLHVDMDCFF SV    RPEL  RP+AV H+ 
Sbjct:  563 RSTRTDPRFMETFFRNSRLHFIGTWRTRIEALMAEVEAAAPQPL--PPAARGAERVVLHVDMDCFFASVAAVGRPELAGRPLAVCHSN 648          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A8J4AX76_9CHLO (UmuC domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AX76_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.820e-14
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 0
Query:  218 RSTKNDPTFMETFFQKSRLHYIGVGPGARQPVFG---------GPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            RST+NDP FMETFF+ SRLH+IG      + +            P  +G  RVV+HVDMDCFF S     RPEL  +PVAV H+ 
Sbjct:   36 RSTRNDPRFMETFFKASRLHFIGTWKTRIEALMAEVEGAAPNPAPYTKGTERVVIHVDMDCFFASAAAVGRPELAGKPVAVCHSN 120          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: UPI001F5C2AA9 (DNA repair protein REV1-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C2AA9)

HSP 1 Score: 84.3 bits (207), Expect = 1.920e-14
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 0
Query:  211 AGAGEAGRSTKNDPTFMETFFQKSRLHYIGVGPGARQPVFGGPLGR----------GDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHN 292
            A +     ST  DP F+E +F+ SRLH+IG      +  F   LG           G  + ++H+DMDCFFVSV++RNRPEL D+PVAV H+
Sbjct:  259 AKSATRSHSTLTDPNFVENYFKHSRLHFIGTWRNRYRKRFSNSLGAKSSKGKNDHSGKKKTIIHIDMDCFFVSVVIRNRPELHDKPVAVCHS 350          
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Match: A0A8J4AWP5_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AWP5_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 2.340e-14
Identity = 50/117 (42.74%), Postives = 62/117 (52.99%), Query Frame = 0
Query:  186 RPTSKPQDARLVLSMPSFKLPVVSAAGAGEAGRSTKNDPTFMETFFQKSRLHYIGVGPGARQPVFG---------GPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNG 293
            R  S PQ A+ + S    +L   S    G   RST+NDP FMETFF+ SRLH+IG      + +            P  +G  RVV+HVDMDCFF S     RPEL  +PVAV H+ 
Sbjct:  425 RDNSSPQAAQALAS----ELRAASDLARGPP-RSTRNDPRFMETFFKASRLHFIGTWKTRIEALMAEVEGAAPNPAPYTKGTERVVIHVDMDCFFASAAAVGRPELAGKPVAVCHSN 536          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80971.15755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1W8_9PHAE5.500e-3464.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSG0_ECTSI3.270e-3166.33Terminal deoxycytidyl transferase rev1, putative n... [more]
A0A7S3XKY2_HETAK1.700e-1554.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835SP66_CHLIN1.990e-1552.27DNA polymerase kappa n=1 Tax=Chlamydomonas incerta... [more]
A0A836B3W7_9CHLO2.000e-1552.27DNA polymerase kappa n=1 Tax=Chlamydomonas schloes... [more]
A8IYH8_CHLRE2.900e-1553.41Deoxycytidyl transferase n=1 Tax=Chlamydomonas rei... [more]
A0A2K3D660_CHLRE3.640e-1553.41DNA polymerase kappa n=2 Tax=Chlamydomonas reinhar... [more]
A0A8J4AX76_9CHLO1.820e-1448.24UmuC domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001F5C2AA91.920e-1443.48DNA repair protein REV1-like n=2 Tax=Lolium rigidu... [more]
A0A8J4AWP5_9CHLO2.340e-1442.74Uncharacterized protein n=1 Tax=Volvox africanus T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001126UmuC domainPFAMPF00817IMScoord: 265..292
e-value: 2.3E-5
score: 24.5
IPR001126UmuC domainPROSITEPS50173UMUCcoord: 262..298
score: 13.911
NoneNo IPR availableGENE3D2.30.40.20coord: 269..291
e-value: 1.0E-7
score: 34.2
NoneNo IPR availablePANTHERPTHR45990FAMILY NOT NAMEDcoord: 191..292
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 255..295

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80971contigH-elongata_contig80971:497..2074 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80971.15755.1mRNA_H-elongata_contig80971.15755.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80971 497..2074 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80971.15755.1 ID=prot_H-elongata_contig80971.15755.1|Name=mRNA_H-elongata_contig80971.15755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=299bp
INSSPSDGNYERIIAGDGTKASDSCGTFLRPFPGGSAGCGSSPGKTPSRV
IDSRGGRKRKLESIPKRGVDCVMGDGSLVGGGLVLENRFMVENGSPCESH
GALVSRALSLGGKVAMPFGDLKKNMRPPARPPQLQAPHQEKLQRKQEEQR
VVGVAGAGIGYSGGSIEGFPQSAQAGSASGINGEGRPTSKPQDARLVLSM
PSFKLPVVSAAGAGEAGRSTKNDPTFMETFFQKSRLHYIGVGPGARQPVF
GGPLGRGDTRVVLHVDMDCFFVSVLVRNRPELRDRPVAVAHNGVCMCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001126UmuC