prot_H-elongata_contig73949.15087.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73949.15087.1
Unique Nameprot_H-elongata_contig73949.15087.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length249
Homology
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BLAST of mRNA_H-elongata_contig73949.15087.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.190e-64
Identity = 145/240 (60.42%), Postives = 165/240 (68.75%), Query Frame = 0 
Query:    1 MDLKTMGEKVRKGQYRTLQEMRDDCELMSKNALLFNRAPGEYHNRARNFFKITQIAWDSLQARPVNSAPPAPAEAAAETTAIAGDPGTPAXXXXXXXXXARRPLAAXXXXXXXXXXXXCDAA-------AGPNAVAATAGTKSHPYQTKPGNHAEAVYEQQLLSKPKAVRAPGSGVRKDLLTGSTKPIKLRPLANNSDPSAAIGLGKNPTSGWISHPHAFMTDWLDLCLYCGCAGWGQQA 233
            MDLKTM  KV  GQY TLQEMR+DCELMSKNALLFNRAPGEYHNRAR++FKITQIAWDSLQA+P N +                      XXXXXXXXX       XXXXXXXXXXXX           A   AV      +S PYQTK G HA+AV+EQQLLS+PK VRA  +GVRKDLLTG T+PIKLRPL  + DP A++GL + P + W+S P + MT+WLDLCL+CGCAGW QQA
Sbjct: 1518 MDLKTMRHKVHTGQYNTLQEMRNDCELMSKNALLFNRAPGEYHNRARDYFKITQIAWDSLQAQPANMSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAEAVPTPPKGQSQPYQTKAGVHAKAVHEQQLLSRPKTVRAVSTGVRKDLLTGRTQPIKLRPLEKSPDPDASVGLQRQPIAAWVSRPQSLMTEWLDLCLFCGCAGWEQQA 1757
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BLAST of mRNA_H-elongata_contig73949.15087.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.770e-31
Identity = 86/207 (41.55%), Postives = 99/207 (47.83%), Query Frame = 0 
Query:    1 MDLKTMGEKVRKGQYRTLQEMRDDCELMSKNALLFNRAPGEYHNRARNFFKITQIAWDSLQARPVNSAPPAPAEAAAETTAIAGDPGTPAXXXXXXXXXARRPLAAXXXXXXXXXXXXCDAAAGPNAVAATAGTKSHPYQTKPGNHAEAVYEQQLLSKPKAVRAPGSGVRKDLLTGSTKPIKLRPLANNSDPSAAIGLGKNPTSGWI 207
            MDLKTM  KV  GQY TLQEMR+DCELMSKNALLFNRAPGE                          A P PA+                                                            +S PYQTK G HA+AV+EQQLLS+PK VRA  +GVRKDLLTG T+PIKLRPL  + DP AA+GL + P + W+
Sbjct: 1290 MDLKTMRHKVHTGQYNTLQEMRNDCELMSKNALLFNRAPGE--------------------------AVPTPAKG-----------------------------------------------------------QSQPYQTKAGVHAKAVHEQQLLSRPKTVRAVSAGVRKDLLTGRTQPIKLRPLEKSPDPDAAVGLQRQPIAAWV 1411
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73949.15087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG36_9PHAE3.190e-6460.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHU3_ECTSI2.770e-3141.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 1..68
e-value: 8.0E-13
score: 50.1
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 1..62
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 1..38
e-value: 1.0E-6
score: 28.7
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 1..43
score: 10.539
NoneNo IPR availablePANTHERPTHR22881:SF11SWI/SNF NUCLEOSOME REMODELING COMPLEX COMPONENTcoord: 1..179
NoneNo IPR availablePANTHERPTHR22881BROMODOMAIN CONTAINING PROTEINcoord: 1..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73949contigH-elongata_contig73949:391..2132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73949.15087.1mRNA_H-elongata_contig73949.15087.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73949 376..2132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73949.15087.1 ID=prot_H-elongata_contig73949.15087.1|Name=mRNA_H-elongata_contig73949.15087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MDLKTMGEKVRKGQYRTLQEMRDDCELMSKNALLFNRAPGEYHNRARNFF
KITQIAWDSLQARPVNSAPPAPAEAAAETTAIAGDPGTPAASAAASAPPA
RRPLAATAAPAATAAAAACDAAAGPNAVAATAGTKSHPYQTKPGNHAEAV
YEQQLLSKPKAVRAPGSGVRKDLLTGSTKPIKLRPLANNSDPSAAIGLGK
NPTSGWISHPHAFMTDWLDLCLYCGCAGWGQQASVPARSNAVAHGEPAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain