prot_H-elongata_contig7325.15002.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7325.15002.1
Unique Nameprot_H-elongata_contig7325.15002.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length417
Homology
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: D7FRU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.590e-59
Identity = 158/441 (35.83%), Postives = 215/441 (48.75%), Query Frame = 0
Query:    1 MHPVVCTMLLGVLDCRSIEGD------DGLWLRADLRIECLSEQHQVYRVVAAVLLGLYGIGIPLFLLAIVLWALKTPHGEDPDDLS-----------------------------------VENEGNIVETLRSISSSSTVPVAPRGLLMRANPRTEAETFAATMPSATLSAQGEEGGDRKLYSGNSGGQEVCLSTS------------ESGQADWYTTNLGNPMVANNTSVGTLNKKTSFLGWV-----WGYSGRCALSVERAITTPPKLSTSLTTEGTDKLGKRWRSTIPLWSPYREDRRWFAAWDLGRRTLLTGLLTLVPADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIAAVAFSVLFLMFLLLMIMCICGGWRLSCAEQRE--VTAAAVIPWPESAS 381
            ++PVVCT+LL V DCR  EG+      +G WLRAD  +EC S QH  Y ++AA  LGLYG+G+PL L  IV WA      ED  D++                                                       P   RG     +   +A   AA   S TLS  G +GG+R   +GN  G  +  + S            +SG  D   +                        W+     W  SGR  L+V ++++  P   +S  T  + +  +RWRSTIP+WSPY+  R+ FAAW++GRR LLTG LT VP  EG   RVA+ACA+A +S++V EVVRPHRDPWIGW+YR GG  ILL ++ GL Q++   D+  P  + +     +F+  +L + +C+CGGWRLSCAEQ      AAA+IP  +S S
Sbjct:  862 LYPVVCTVLLRVFDCRDGEGNGDADDGEGSWLRADTTVECSSGQHTSYEMIAATCLGLYGLGLPLALATIVYWAKSGE--EDQRDVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPPRGRGASGAGSVEEDASFLAAMTSSPTLS--GGDGGER---AGNGNGVNITSAASAIARAGRRSGGGDSGHVD--ASXXXXXXXXXXXXXXXXXXXXXCCVWLSKSKAWRASGRGVLAVRKSMS--PDSDSSWETTSSKRNNRRWRSTIPVWSPYKAGRQGFAAWEIGRRLLLTGFLTAVPPGEGFM-RVAVACALAGVSLVVGEVVRPHRDPWIGWVYRGGGFAILLANLTGLAQKIGAADTGSPWVVVSAG---IFISLVLALAVCLCGGWRLSCAEQGSSAAAAAAIIPRRDSRS 1287          
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: A0A6H5KU24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU24_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.690e-45
Identity = 105/223 (47.09%), Postives = 139/223 (62.33%), Query Frame = 0
Query:  194 WGYSGRCALSVERAITTPPKLSTSLTTEGTDKLGKRWRSTIPLWSPYREDRRWFAAWDLGRRTLLTGLLTLVPADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIAAVAFSVLFLMFLLLMIMCICGGWRLSCAEQRE--VTAAAVIPWPESASISSLRRPA-PS--GVDVAPSHSDIGANSDHKKG 411
            W  SGR  L+V +++++    S   TT    +  +RWRSTIP+WSPY+  R+ FAAW+LGRR LLTG LT VP  EG   RVA+ACA+A +S++V EVVRPHRDPWIGW+YR GG+ ILL ++ GL Q+    D+  P  + +     +F+  +L + +C+CGGWRLSCAEQ      AAA+IP  +S       RPA PS  G  V   H D G  S   +G
Sbjct:  425 WRASGRGVLAVRKSMSSDSDSSWETTTSS-KRNNRRWRSTIPVWSPYKAGRQGFAAWELGRRLLLTGFLTAVPPGEGFM-RVAVACALAGVSLVVGEVVRPHRDPWIGWVYRGGGLAILLANLTGLAQKTGAADTGSPLVVVSAG---IFISLMLALAVCLCGGWRLSCAEQGSSAAAAAAIIPRRDS-------RPAFPSVVGPSVGGDHHDGGLGSSSTRG 635          
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: A0A835YVC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.570e-7
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  231 RSTIPLWSPYREDRRWFAAWDLGRRTLLTGLLTLV-PADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIA--AVAFSVLFLMFLL 348
            ++++ LW PY+ +  ++   +  RR +LTGLL  + P   G++   A+AC  AV + +  E +RPHRD +  W+YR+G  ++ +   L LL +V   D    + +    VA +VL L+  L
Sbjct:  534 KASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQS---AVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASETIVGNLLVALNVLLLVMAL 651          
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: A0A836CF41_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF41_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.450e-7
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  231 RSTIPLWSPYREDRRWFAAWDLGRRTLLTGLLTLV-PADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIA--AVAFSVLFLMFLL 348
            ++++ LW PY+ +  ++   +  RR +LTGLL  + P   G++   A+AC  AV + +  E +RPHRD +  W+YR+G  ++ +   L LL +V   D    + +    VA +VL L+  L
Sbjct: 1121 KASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQS---AVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASETIVGNLLVALNVLLLVMAL 1238          
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: A0A835YZ05_9STRA (UCH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ05_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.530e-7
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  231 RSTIPLWSPYREDRRWFAAWDLGRRTLLTGLLTLV-PADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIA--AVAFSVLFLMFLL 348
            ++++ LW PY+ +  ++   +  RR +LTGLL  + P   G++   A+AC  AV + +  E +RPHRD +  W+YR+G  ++ +   L LL +V   D    + +    VA +VL L+  L
Sbjct:  782 KASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQS---AVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASETIVGNLLVALNVLLLVMAL 899          
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: A0A835Z719_9STRA (UCH domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z719_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.890e-7
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  231 RSTIPLWSPYREDRRWFAAWDLGRRTLLTGLLTLV-PADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIA--AVAFSVLFLMFLL 348
            ++++ LW PY+ +  ++   +  RR +LTGLL  + P   G++   A+AC  AV + +  E +RPHRD +  W+YR+G  ++ +   L LL +V   D    + +    VA +VL L+  L
Sbjct: 1121 KASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQS---AVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASETIVGNLLVALNVLLLVMAL 1238          
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Match: D7FTU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU0_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.970e-5
Identity = 35/113 (30.97%), Postives = 56/113 (49.56%), Query Frame = 0
Query:  224 DKLGKRWRSTIP----LWSPYREDRRWFAAWDLGRRTLLTGLLTLVPADEGRTERVALACAMAVLSILVAEVVRPHRDPWIGWIYRVGGVVILLVDVLGLLQEVWPEDSQPPS 332
            D++G+R  S I     LW PYR +R ++   +  RR  LTG    +  D   + ++A+   +AV+ ++V+E++ P   P   W+YR G  V+     L LL  V   D    S
Sbjct:   27 DEVGRRSNSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDS--SAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDEGDQS 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7325.15002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRU6_ECTSI2.590e-5935.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU24_9PHAE4.690e-4547.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVC3_9STRA7.570e-732.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF41_9STRA8.450e-732.23Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YZ05_9STRA8.530e-732.23UCH domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z719_9STRA8.890e-732.23UCH domain-containing protein n=2 Tax=Tribonema mi... [more]
D7FTU0_ECTSI2.970e-530.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 359..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 333..358
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 322..332
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 302..321
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..301
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..69
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableTMHMMTMhelixcoord: 334..356
NoneNo IPR availableTMHMMTMhelixcoord: 302..324
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7325contigH-elongata_contig7325:6382..9333 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7325.15002.1mRNA_H-elongata_contig7325.15002.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7325 6382..9345 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7325.15002.1 ID=prot_H-elongata_contig7325.15002.1|Name=mRNA_H-elongata_contig7325.15002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=417bp
MHPVVCTMLLGVLDCRSIEGDDGLWLRADLRIECLSEQHQVYRVVAAVLL
GLYGIGIPLFLLAIVLWALKTPHGEDPDDLSVENEGNIVETLRSISSSST
VPVAPRGLLMRANPRTEAETFAATMPSATLSAQGEEGGDRKLYSGNSGGQ
EVCLSTSESGQADWYTTNLGNPMVANNTSVGTLNKKTSFLGWVWGYSGRC
ALSVERAITTPPKLSTSLTTEGTDKLGKRWRSTIPLWSPYREDRRWFAAW
DLGRRTLLTGLLTLVPADEGRTERVALACAMAVLSILVAEVVRPHRDPWI
GWIYRVGGVVILLVDVLGLLQEVWPEDSQPPSSIAAVAFSVLFLMFLLLM
IMCICGGWRLSCAEQREVTAAAVIPWPESASISSLRRPAPSGVDVAPSHS
DIGANSDHKKGSDNPSP
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