prot_H-elongata_contig7094.14751.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig7094.14751.1
Unique Name	prot_H-elongata_contig7094.14751.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	133

Homology

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: D8LCY2_ECTSI (Holliday junction resolvase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY2_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 2.810e-57
Identity = 91/126 (72.22%), Postives = 113/126 (89.68%), Query Frame = 0

Query:    2 PVTKVLRRDSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMGRRTADREDEIAAMVILQGFLDSAEADRGGLSTL 127
            P+T+V RR ST+KLDP++V+ KLR  + + + CGLVVGWPLS+SG+A+GQCLMVLQFLR+LHL+GK+DIPVTL+DER+TSVEAR IL++DG+GR+ A+REDE AAMVILQGFLDSAEA  GGLSTL
Sbjct:  124 PLTRVPRRQSTKKLDPALVIGKLREIVEDCSACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLGRKIAEREDETAAMVILQGFLDSAEAVHGGLSTL 249

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2V8TNH5_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8TNH5_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 8.670e-15
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 0

Query:    9 RDSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMG-RRTADREDEIAAMVILQGFLDS 116
            R + R+ D  V L  LR    E+    +VVG PL   G+   Q   V +F +ELH    +D+P+  WDERLTS  A   LEE G+  R+  ++ D+IAAM+ILQ +LDS
Sbjct:   28 RPTLRRKDLKVDLEALRRLAEENEVHEVVVGQPLHMDGKESPQSQKVARFAQELHRV--LDLPIVFWDERLTSFAAEQHLEEMGLNWRQRREQVDKIAAMIILQNYLDS 134

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2V8LSD1_9BACT (Putative pre-16S rRNA nuclease n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V8LSD1_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.730e-14
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 0

Query:    9 RDSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMG-RRTADREDEIAAMVILQGFLDS 116
            R + R+ D    L  LR    E+    +VVG PL  SG    Q   V +F  ++H    +DIPV  WDERLTS  A   LEE G+  R+  ++ D+IAAM+ILQ +LDS
Sbjct:   28 RPTIRRKDVKTDLEALRRLTEENEVHEIVVGQPLHMSGHQSPQSEKVARFAEQIHKV--LDIPVVFWDERLTSFAAEQHLEEMGLNWRKRREQVDKIAAMIILQNYLDS 134

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2V8N2C7_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8N2C7_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.730e-14
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 0

Query:    9 RDSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMG-RRTADREDEIAAMVILQGFLDS 116
            R + R+ D +  + KLR    E+    +VVG PL   GQ   Q   V +F  +L  +  +D+P+  WDERLTS EA   LE+ G+  R+  ++ D+IAAM+ILQ +LDS
Sbjct:   28 RPTVRRKDIAADIEKLRRLAQENEVHEVVVGQPLHMDGQPSPQSQKVARFAEQL--RKVLDLPIIFWDERLTSFEAEQHLEQMGLNWRQRREQVDKIAAMIILQNYLDS 134

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A7S4D9E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9E5_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 4.500e-13
Identity = 46/121 (38.02%), Postives = 63/121 (52.07%), Query Frame = 0

Query:    2 PVTKVLRRDSTRKLDPSV-VLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMGR-RTADREDEIAAMVILQGFLDSAEAD 120
            P+ K+ R   T + D    +  KL+  + E    G VVGWPL   G    QC  VL FL  +H   ++ IP+ LWDER TSV+AR  L +   G+ R    ED++AA +IL+  L     D
Sbjct:   61 PLKKLQRMRPTYRQDSMQNISSKLQKVIAEQQAIGAVVGWPLMPDGSLGMQCGHVLAFLTGMHQINEVQIPMVLWDERGTSVDARSFLWDAKTGKKRMKQMEDQVAAALILKDLLPEDTGD 181

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2G4YNK4_9PROT (Putative pre-16S rRNA nuclease n=2 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YNK4_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 7.330e-13
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query:   23 KLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEA-RDILEEDGMGRRTADREDEIAAMVILQGFLDSAEADR 121
            +L T + E N  GLV+G PL+  G    +C    QF    ++ GKIDIPV LWDERL++V   R +L+ D   +R  +  D++AA  ILQG LD     R
Sbjct:   57 RLLTIISEQNVGGLVLGLPLNMDGTEGPRCQSTRQFAE--NMAGKIDIPVVLWDERLSTVAVTRTLLDADASRKRRKEVVDKMAAAYILQGALDKMSYSR 154

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2A4TD98_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4TD98_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-12
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 0

Query:   23 KLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERL-TSVEARDILEEDGMGRRTADREDEIAAMVILQGFLD 115
            +L T + E N  GL++G+PL+  G    +C    QF + ++  GKI+IP+ LWDERL T+   R +LE D   +R  +  D++AA  ILQG LD
Sbjct:   62 RLMTIIGEQNVGGLILGFPLNMDGTEGPRCQSTRQFAQNIY--GKIEIPIALWDERLSTAAVTRTLLEADASRKRRKEVIDKMAAAYILQGALD 153

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2V8JA09_9BACT (Putative pre-16S rRNA nuclease n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8JA09_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-12
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 0

Query:    9 RDSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMGRRTADRE-DEIAAMVILQGFLDS 116
            R + ++ DP   +  LR    E+    +VVG PL  SG+   Q   +  F   L  + K+DIPV  WDERLTS  A   LEE G+  R   R  D+IAAM+ILQ +LDS
Sbjct:   28 RPTIQRKDPKSDIEVLRRLAAENEVHQIVVGQPLHLSGKQSRQSRKIGVFAAAL--EKKLDIPVAFWDERLTSFAAEQHLEEMGLNWRQRRRHVDKIAAMIILQNYLDS 134

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A1T5L120_9CLOT (Putative pre-16S rRNA nuclease n=1 Tax=Maledivibacter halophilus TaxID=36842 RepID=A0A1T5L120_9CLOT)

HSP 1 Score: 68.6 bits (166), Expect = 4.110e-12
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0

Query:   10 DSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMGRRTADRE-DEIAAMVILQGFLDS 116
            ++ ++    V + +LR  + E N   LVVG P + +G    Q   VL F+ ++  K KIDI V LWDERLT+V A  +L    + R+   +  D+IAA+ ILQG+LDS
Sbjct:   29 ETIKRTGNKVAINRLRELISEKNVTKLVVGLPKNMNGTLGPQGEKVLSFVDKI--KDKIDIEVVLWDERLTTVAAEKMLISADVSRKKRKKVIDKIAAVYILQGYLDS 134

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BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Match: A0A2V9ZVN2_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9ZVN2_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 5.340e-12
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 0

Query:   10 DSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKGQCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMG-RRTADREDEIAAMVILQGFLDSAEA 119
            ++ R+ +      +LR  + +     +VVG PL  SG A  Q   V +F  E+  + + ++PV LWDERLTS +A  +L E  M  RR A+  D +AA++ILQ FL+S +A
Sbjct:   35 ETIRRKNKRTDFEQLRQVIAQYEVREIVVGHPLYMSGDASPQSRRVSEFAEEV--RQRFNLPVHLWDERLTSTQANRVLRESEMSIRRRAEVVDRLAAVLILQSFLESRQA 143

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot

BLAST of mRNA_H-elongata_contig7094.14751.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCY2_ECTSI	2.810e-57	72.22	Holliday junction resolvase-like protein n=1 Tax=E...	[more]
A0A2V8TNH5_9BACT	8.670e-15	42.20	Putative pre-16S rRNA nuclease n=1 Tax=Acidobacter...	[more]
A0A2V8LSD1_9BACT	1.730e-14	42.20	Putative pre-16S rRNA nuclease n=2 Tax=unclassifie...	[more]
A0A2V8N2C7_9BACT	1.730e-14	40.37	Putative pre-16S rRNA nuclease n=1 Tax=Acidobacter...	[more]
A0A7S4D9E5_HETAK	4.500e-13	38.02	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A2G4YNK4_9PROT	7.330e-13	42.00	Putative pre-16S rRNA nuclease n=2 Tax=Paremcibact...	[more]
A0A2A4TD98_9PROT	1.120e-12	41.49	Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteo...	[more]
A0A2V8JA09_9BACT	1.500e-12	42.20	Putative pre-16S rRNA nuclease n=2 Tax=Acidobacter...	[more]
A0A1T5L120_9CLOT	4.110e-12	39.81	Putative pre-16S rRNA nuclease n=1 Tax=Maledivibac...	[more]
A0A2V9ZVN2_9BACT	5.340e-12	37.84	Putative pre-16S rRNA nuclease n=1 Tax=Acidobacter...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 18..116 e-value: 2.0E-20 score: 73.5
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 22..115 e-value: 9.7E-15 score: 52.8
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 18..119
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 1..123 e-value: 4.8E-24 score: 87.0
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 16..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig7094	contig	H-elongata_contig7094:966..3055 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig7094.14751.1	mRNA_H-elongata_contig7094.14751.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig7094 922..3849 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig7094.14751.1 ID=prot_H-elongata_contig7094.14751.1|Name=mRNA_H-elongata_contig7094.14751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MPVTKVLRRDSTRKLDPSVVLRKLRTFLHESNTCGLVVGWPLSRSGQAKG
QCLMVLQFLRELHLKGKIDIPVTLWDERLTSVEARDILEEDGMGRRTADR
EDEIAAMVILQGFLDSAEADRGGLSTLRSKPD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005227	YqgF
IPR037027	YqgF/RNaseH-like_dom_sf
IPR012337	RNaseH-like_sf