prot_H-elongata_contig5666.13112.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5666.13112.1
Unique Nameprot_H-elongata_contig5666.13112.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length392
Homology
[Close]
BLAST of mRNA_H-elongata_contig5666.13112.1 vs. uniprot
Match: A0A6H5K2M2_9PHAE (TFIIS N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M2_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 8.020e-74
Identity = 145/291 (49.83%), Postives = 191/291 (65.64%), Query Frame = 0 
Query:    1 MPSLKLLCLDLCSRHLDRLSNLGDMPTEMFIDLLNRAKGKATPDLVQRLQDSNERLLCDDVDEAFWKRAVDEHIMRRMIPAPGPVLVERVNDRKERLTELIAE--TPETP-------SKEWSGEVIEILKALGEIPPSVGLLRETMIGKAVAPLRKKPDAQVSRLATDTIHFWKQAAR------TTTPDQRCLEALSSSPKARGGAGAGAV-EDKQRAVEDGFNCRTWNALYKHLEVLREDKVRASSKRAREAREREQQKKPKLIFGKSRGEDFMKLKPGSGSR--GAPAF 273
            +PSLK+LC+DLC+RHL+RLS+LGD+PTE+FIDLL RAK KATP LV+RLQD N RL C +VD  FWK+AV+ HI+RR +PAPGPVLVERVN  KE L +L+    +P          S+EWS +V  IL+AL E P  VG+L+ T+IGK V+  RK  + +V+R A + +  WK+AA       TT                RG A   ++ E+K+RAVE+GF CRTW +LY++LE+LR +KVRAS            QK+PKLI GKS+G+ + + K G  SR  GAP+F
Sbjct:   23 LPSLKILCVDLCARHLERLSDLGDIPTEVFIDLLRRAKEKATPALVKRLQDVNARLSCQEVDITFWKQAVEGHILRRTVPAPGPVLVERVNHHKECLKDLLGSMASPSAEIGGGGQDSREWSRDVTNILQALEETPVCVGVLKATLIGKTVSQFRKAANPEVARTAAELVRRWKEAAGAAATPVTTPSGVXXXXXXXXXXXXRGEAMQRSLAEEKRRAVEEGFQCRTWESLYQYLELLRAEKVRASXXXXXXXXXXXLQKRPKLIVGKSKGQGYTE-KTGRISRKSGAPSF 312
[Close]
BLAST of mRNA_H-elongata_contig5666.13112.1 vs. uniprot
Match: D8LL33_ECTSI (Protein-serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL33_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.100e-19
Identity = 82/272 (30.15%), Postives = 109/272 (40.07%), Query Frame = 0 
Query:   14 RHLDRLSNLGDMPTEMFIDLLNRAKGKATPDLVQRLQDSNERLLCDDVDEAFWKRAVDEHIMRRMIPAPGPVLVERVNDRKERLTELIAETPETPSKEWSGEVIEILKALGEIPPSVGLLRETMIGKAVAPLRKKPDAQVSRLATDTIHFWKQAART------TTPDQRCLEALSSSPKARGGAGAGAVEDKQRAVEDGFNCRTWNALYK------------------------HLEVLREDKVRASSKRAREAREREQQKKPKLIFGKSRG 255
            RHL+RLS+LGD+PTE+FIDLL RAK KATP +V+RLQD N                                                                    AL E P SVG+L+ T+IGK V+  RK  + +V+R A + +  WK+AA        T P                       ++K+RAVE+GF CRTW +LY+                        +LE+LR +KV                K+PKLI GKS+G
Sbjct:  414 RHLERLSDLGDIPTEVFIDLLRRAKEKATPAIVKRLQDVN-------------------------------------------------------------------AALEETPVSVGVLKVTLIGKTVSQFRKAANPEVARTAAELVRRWKEAAGVAATTVNTPPGVXXXXXXXXXXXXXEAVQRSLADEKRRAVEEGFQCRTWESLYQEGMPQLLSHPVGATNIARHCSEDMYLELLRAEKVXXXXXXXXXXXXXXLLKRPKLIVGKSKG 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5666.13112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2M2_9PHAE8.020e-7449.83TFIIS N-terminal domain-containing protein n=1 Tax... [more]
D8LL33_ECTSI1.100e-1930.15Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 97..170
e-value: 0.0032
score: 26.7
IPR035441TFIIS/LEDGF domain superfamilyGENE3D1.20.930.10coord: 85..178
e-value: 1.5E-12
score: 49.0
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 109..175
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 118..167
e-value: 2.6E-7
score: 30.5
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 95..171
score: 13.189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5666contigH-elongata_contig5666:3465..9036 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5666.13112.1mRNA_H-elongata_contig5666.13112.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5666 1538..9071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5666.13112.1 ID=prot_H-elongata_contig5666.13112.1|Name=mRNA_H-elongata_contig5666.13112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=392bp
MPSLKLLCLDLCSRHLDRLSNLGDMPTEMFIDLLNRAKGKATPDLVQRLQ
DSNERLLCDDVDEAFWKRAVDEHIMRRMIPAPGPVLVERVNDRKERLTEL
IAETPETPSKEWSGEVIEILKALGEIPPSVGLLRETMIGKAVAPLRKKPD
AQVSRLATDTIHFWKQAARTTTPDQRCLEALSSSPKARGGAGAGAVEDKQ
RAVEDGFNCRTWNALYKHLEVLREDKVRASSKRAREAREREQQKKPKLIF
GKSRGEDFMKLKPGSGSRGAPAFELSRNKSKKSPIQGGSGIFSGSSKRVN
KNINSNIRSNKNSSSSSSSSNTNKNSSSSSGGGSGGKSRRKNNYTSGDNA
TKISEIRRMVVTGQRLSNPAKGDRPAPKGAPPPAKQSKFWQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003617TFIIS/CRSP70_N_sub
IPR035441TFIIS/LEDGF_dom_sf
IPR017923TFIIS_N