prot_H-elongata_contig5605.13039.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5605.13039.1
Unique Nameprot_H-elongata_contig5605.13039.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length786
Homology
BLAST of mRNA_H-elongata_contig5605.13039.1 vs. uniprot
Match: D7FSK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK6_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.140e-54
Identity = 147/385 (38.18%), Postives = 198/385 (51.43%), Query Frame = 0
Query:  389 GKIAVARLGTTSGTDSAEVFVSVSDVGRRVLIEARDFDGGPVLASSTVSLELWTVTTGVPLLRPPTNQKAFRERLEDQLPALLGAGCSSRTERCAKKRVAIQAQPRRME-RLRDGLWRCSDIDRASEKAKINH-NANELGFESASDIRARASLSATKTITSLGTELLTEKRALRLEMLNRMIEEFHIKHGR----------LDERTGRIIAVKGPDDG-DRTTA-------DRSRGNFAAEKARS-----------TGEAEPKIDNGGCKGGGKGHGRRCIHAHRKCGFCRVKEVRRLLSPAKPKRRLGLGLGASQDHASMVPATKTRQEDXXXXXXXXXXXXXXXXXXXXDDNTDFKCDGCGRLINGTDDRFHCETCGDYDLCQ 742
            G + +ARLG+     +  VFV V+D GRR+LIEARDF+ GP+LA STVSLE WT TTG+  L PPT+ +AF++ LE+QL ALLGAG  SRT R  +KR A +AQ +    R R  L   S++    EK ++     ++ G E+      R        ++   +  L +KRALRLEML RM+++FH KHGR            E+ G  +    P D  D TT        + + G    E+ R             GE +P I       GG+GHGR+C H  R+CGFCRV+EVRR+L    P R       +       +P  K   +                     +++ +F+CD CGR+I  T DRFHCETCGDYDL Q
Sbjct:    2 GTVPIARLGS----HAEGVFVVVTDGGRRLLIEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTDNRAFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQQGGGVRWRGTLLELSEM----EKGRLGQLEEDDNGSENNDANPDRPPPKLPLLLSPRDSTPLEQKRALRLEMLTRMVDDFHAKHGRSRRXXXXXXXXXEKRG--VGAPAPGDARDPTTVVATGCDDESAVGGHDGERVREGPVHIVSNEGQDGENDPHITTANQAKGGRGHGRKCEHTFRRCGFCRVEEVRRVLGIRAPGRTREPVQESMVVRVPSLPQLKFGDDQDDDNEEEDFEWVTDSD----EEDPEFECDSCGRVIEDTSDRFHCETCGDYDLMQ 372          
BLAST of mRNA_H-elongata_contig5605.13039.1 vs. uniprot
Match: A0A6H5KMB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB6_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.400e-43
Identity = 131/363 (36.09%), Postives = 177/363 (48.76%), Query Frame = 0
Query:  144 VVKANGGTLTISLCKASAEVVSLYNLWE--------AGKWNRTGCIPRKIRRGRARYKRQWVTLQASWRDWEGLGYGPLQWMSHVQKKHLGMLALSWVSFETGDR--------------ISQKTDKTYFKAFLQFRPILARVRRIVEISTKV--------------------------AIATATVEEGEGVWG--------RVMVRDDGRVFEVEV-EAEGQGLPLDRRWL----RSFGEETWEETGLGKLLWMDWMWRRYLATCLSHQVALSTSTVTTNGCRTLDESGKRDI---IIIQTRLPLLLWSGKIAVARLGTTSGTDSAEVFVSVSDVGRRVLIEARDFDGGPVLASSTVSLELWT 442
            +VKA GG LT+SL + S    S              A   N +G        GRA  +R  +TL A+W DW   GYGPLQWMSH QK  +  L+L WVSF T  R              +  +  +T  +AFL F PIL+ V R V  S+                              +      G  ++G        RV+VRD+G V  VEV EAE + +   +  +    ++FG+E+W ETGLG+LLW+D   R+YLA  L+ QVA+             D+     I   ++I + LPL  W G + +ARLG+     +  VFV ++D GRR+LIEARDF+GGP+LA STVSLE WT
Sbjct:    1 MVKATGGELTLSLFQPSRAAPSTGGTTRPAGVRGRGAAAANGSGVHSTAGDPGRAAMRRS-LTLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRTPARGFEEKNAPNANETPVRHRRRRTTKEAFLHFHPILSSVTRDVGKSSGAPGSSVRGTGXXXXXXXXXXXXXXXXXTSSRTAPRGGSEIFGGEETSRTSRVLVRDEGGVLRVEVVEAERKNVGRSKSGVSMLDQAFGKESWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDDRDGRGGQHDQDNVLKIKPRLVIISDLPLPYWMGTVPIARLGS----HAEGVFVMITDAGRRLLIEARDFEGGPLLAKSTVSLEDWT 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5605.13039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSK6_ECTSI1.140e-5438.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB6_9PHAE3.400e-4336.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 710..756
e-value: 9.4E-5
score: 31.8
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 713..749
e-value: 3.9E-8
score: 33.0
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 710..758
score: 10.812
NoneNo IPR availableGENE3D3.30.60.90coord: 709..763
e-value: 4.1E-9
score: 38.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 713..748

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5605contigH-elongata_contig5605:2517..7125 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5605.13039.1mRNA_H-elongata_contig5605.13039.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5605 2517..8972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5605.13039.1 ID=prot_H-elongata_contig5605.13039.1|Name=mRNA_H-elongata_contig5605.13039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=786bp
MRQDWLVMGFPTLRWLDGRNRVALAEHLVRCIHARDGSLAVNCGERVLRS
DIFFPQISLGGDRHSASPATIVHPLDPRGAAREDRGGAIWDTCPSGAPSG
LCSCRVVMRIGASLPLSETAFVYGEDEQHPLSLGLGRGNRWLAVVKANGG
TLTISLCKASAEVVSLYNLWEAGKWNRTGCIPRKIRRGRARYKRQWVTLQ
ASWRDWEGLGYGPLQWMSHVQKKHLGMLALSWVSFETGDRISQKTDKTYF
KAFLQFRPILARVRRIVEISTKVAIATATVEEGEGVWGRVMVRDDGRVFE
VEVEAEGQGLPLDRRWLRSFGEETWEETGLGKLLWMDWMWRRYLATCLSH
QVALSTSTVTTNGCRTLDESGKRDIIIIQTRLPLLLWSGKIAVARLGTTS
GTDSAEVFVSVSDVGRRVLIEARDFDGGPVLASSTVSLELWTVTTGVPLL
RPPTNQKAFRERLEDQLPALLGAGCSSRTERCAKKRVAIQAQPRRMERLR
DGLWRCSDIDRASEKAKINHNANELGFESASDIRARASLSATKTITSLGT
ELLTEKRALRLEMLNRMIEEFHIKHGRLDERTGRIIAVKGPDDGDRTTAD
RSRGNFAAEKARSTGEAEPKIDNGGCKGGGKGHGRRCIHAHRKCGFCRVK
EVRRLLSPAKPKRRLGLGLGASQDHASMVPATKTRQEDGTGNNYSEDEEE
YEWITDTDDDNTDFKCDGCGRLINGTDDRFHCETCGDYDLCQVCFLSHEA
LRGHVSTDEARHASNNHLSSHVVTHITGKPILTPI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ