prot_H-elongata_contig55654.12990.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55654.12990.1
Unique Nameprot_H-elongata_contig55654.12990.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length175
Homology
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 105 bits (262), Expect = 2.190e-25
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELP---EVYLGL-----------LKKAMYELVHAGLLWSKK 132
            W +V+RP+GKTV+G+R VF+ K+  DG +E+ K R+VA+GF  + G HY E+ +     +SIR V+ + A  + E+ QLD   AYL  E+EEEIY+E+P   E  LG            ++KA+Y L  +G +W KK
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMWYKK 185          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 111 bits (277), Expect = 3.960e-25
Identity = 58/145 (40.00%), Postives = 90/145 (62.07%), Query Frame = 0
Query:    9 VWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVY------LGLLKKAMYELVHAGLLWSKKVRDRAQGEGFSEISS 147
            V++ V RP+ + ++G++ VFK K   DG++EKYK R+VAQGF  V+GI Y E+ +P     SIR++L + A   WE+ Q+DV  A+L  E+EEEIY+++P  +      +  LKKA+Y L  A   W KK+    +  GF+ + +
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQA 1170          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 109 bits (273), Expect = 1.310e-24
Identity = 54/150 (36.00%), Postives = 89/150 (59.33%), Query Frame = 0
Query:    8 DVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVYLGL--------LKKAMYELVHAGLLWSKKVRDRAQGEGFSEISSRP 149
            + W++V  PKGK V+G++ VFK K D++G +++YK R+VAQG+   +G+ Y E  SP     +IR +L +  A +WEV Q+DV  A+L+  +EEEIY+  P+ Y+          LKK++Y L  +   W+  +    +  G+ ++ S P
Sbjct:  840 ETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDP 989          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 109 bits (272), Expect = 1.830e-24
Identity = 53/146 (36.30%), Postives = 92/146 (63.01%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVY------LGLLKKAMYELVHAGLLWSKKVRDRAQGEGFSEISSRP 149
            W++VE PKG+ V+G+R V+K K+D+DGR  +YK R+VAQGF    GI + ++ +P    ++IR+++ +  ALS  +  +D+  AYL  +++EE+Y++ P  Y      + LL++A+Y L  AG  W   ++ +    G+++I S P
Sbjct:  725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEP 870          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 108 bits (270), Expect = 3.270e-24
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVYLGL--------LKKAMYELVHAGLLWSKKVRDRAQGEGFSEISSRP 149
            W++V+RPK K ++G + V+K K ++DG I+K+K R+VA+G+    GI + E+ +P     +IR VL + A L  +V QLDV  A+L  E+EEE+YVE P+ Y+          L+KA+Y L  A   W+ K+    Q  GF+   S P
Sbjct:  512 WELVDRPKSKDIIGLKWVYKTKFNEDGSIQKHKARLVAKGYSQQPGIDFNETFAPVVRMETIRTVLALAAQLKTKVYQLDVKSAFLNGELEEEVYVEQPQGYVEKGREDKVYRLRKALYGLKQAPRAWNNKIDHYFQQNGFTRSLSEP 659          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 107 bits (268), Expect = 3.270e-24
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 0
Query:    8 DVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELP------EVYLGLLKKAMYELVHAGLLWSKKVRDRAQGEGFS 143
            +++  VE PK + V+G++ VF+ K   +G+IEKYK R+VAQGF  VKGI Y E+ +P     SIR +L + A L  E+ Q+DV  A+L  +++EEIY++ P      E  +  LKK++YEL  A   W KKVR+  +  GF+
Sbjct:   24 NLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEWYKKVREEFEALGFT 165          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 108 bits (270), Expect = 3.390e-24
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVYLGL--------LKKAMYELVHAGLLWSKKVRDRAQGEGFSEISSRP 149
            W++V+RPK K ++G + V+K K ++DG I+K+K R+VA+G+    GI + E+ +P     +IR VL + A L  +V QLDV  A+L  E+EEE+YVE P+ Y+          L+KA+Y L  A   W+ K+    Q  GF+   S P
Sbjct:  749 WELVDRPKSKDIIGLKWVYKTKFNEDGSIQKHKARLVAKGYSQQPGIDFNETFAPVVRMETIRTVLALAAQLKTKVYQLDVKSAFLNGELEEEVYVEQPQGYVEKGREDKVYRLRKALYGLKQAPRAWNNKIDHYFQQNGFTRSLSEP 896          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D)

HSP 1 Score: 105 bits (263), Expect = 3.810e-24
Identity = 57/175 (32.57%), Postives = 96/175 (54.86%), Query Frame = 0
Query:    1 MDGQTARDVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVYLGL--------LKKAMYELVHAGLLWSKKVRDRAQGEGFSEISSRPIHVPADSPRGSGSRYCCL 167
            MD   +  VW +V+ P+G   +G + ++KRKI  DG++E YK R+VA+G+   +G+ YEE+ SP     SIR++L + A   +E+ Q+DV  A+L   +EE++Y+E P+ ++          LK+++Y L  A   W+ +  +  +  GF +    P     DS  GS   +  L
Sbjct:  112 MDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGLKQASRSWNIRFNEAVKSFGFIQNMDEPCVYKKDS--GSAVTFLVL 284          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A438G5R6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G5R6_VITVI)

HSP 1 Score: 104 bits (260), Expect = 5.940e-24
Identity = 63/176 (35.80%), Postives = 96/176 (54.55%), Query Frame = 0
Query:    1 MDGQTARDVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVY--------LGLLKKAMYELVHAGLLWSKKVRDRAQGEGFSE-ISSRPIHVPADSPRGSGSRYCCL 167
            M      DVW +VE P G   +G + VFK K D  G IE+YK R+VA+GF   +GI Y E+ SP   + S+R++L ++A    E++Q+DV  A+L  E+EEE+Y++ PE +        +  LKK++Y L  A   W  K  +      F E +  + I++     + SGS+ C L
Sbjct:    5 MSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPISKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFSFVENVMDQCIYL-----KVSGSKVCFL 175          
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Match: A0A438FVW1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW1_VITVI)

HSP 1 Score: 107 bits (268), Expect = 5.940e-24
Identity = 64/176 (36.36%), Postives = 97/176 (55.11%), Query Frame = 0
Query:    1 MDGQTARDVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGFRHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVEEEIYVELPEVY--------LGLLKKAMYELVHAGLLWSKKVRDRAQGEGFSE-ISSRPIHVPADSPRGSGSRYCCL 167
            M      DVW +VE P G   +G + VFK K D  G IE+YK R+VA+GF   +GI Y E+ SP   + S+R++L ++A    E++Q+DV  A+L  E+EEE+Y++ PE +        +  LKK++Y L  A   W  K  +     GF E +  + I++     + SGS+ C L
Sbjct:  298 MSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYL-----KVSGSKVCFL 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55654.12990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9Y7J8_LYGHE2.190e-2541.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK3.960e-2540.00Integrase catalytic domain-containing protein (Fra... [more]
A0A7D9D6Q5_PARCT1.310e-2436.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A177TV96_9BASI1.830e-2436.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1QWW3_PRUDU3.270e-2439.19Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A2R6NNP3_9APHY3.270e-2442.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y1R9H3_PRUDU3.390e-2439.19Transposable element protein (Fragment) n=1 Tax=Pr... [more]
UPI001C988E4D3.810e-2432.57hypothetical protein n=3 Tax=Bacteria TaxID=2 RepI... [more]
A0A438G5R6_VITVI5.940e-2435.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FVW1_VITVI5.940e-2436.36Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..144
e-value: 1.2E-29
score: 103.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..132
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55654contigH-elongata_contig55654:2400..2942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55654.12990.1mRNA_H-elongata_contig55654.12990.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55654 1484..2972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55654.12990.1 ID=prot_H-elongata_contig55654.12990.1|Name=mRNA_H-elongata_contig55654.12990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MDGQTARDVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRIVAQGF
RHVKGIHYEESSSPTPAQASIRMVLGMIAALSWEVRQLDVDMAYLEAEVE
EEIYVELPEVYLGLLKKAMYELVHAGLLWSKKVRDRAQGEGFSEISSRPI
HVPADSPRGSGSRYCCLRRRPPGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like