prot_H-elongata_contig55625.12988.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55625.12988.1
Unique Nameprot_H-elongata_contig55625.12988.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length631
Homology
BLAST of mRNA_H-elongata_contig55625.12988.1 vs. uniprot
Match: D7G003_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 5.520e-71
Identity = 151/352 (42.90%), Postives = 201/352 (57.10%), Query Frame = 0
Query:    1 MQVEEGECSAVDDSTADGPSSVESETDAKDYCSLPEATPCAEVDLGLHETSGVSVSMYYDEACLEGGGGVSGCGXXXVSTCRICFVNESRWETNFPNERVPDWGACPCCVADTLGVTCQGGFTGTNFTSTSPAVWDEVLDSFTEGSIPALAVLSTILFMCLIVACCCIRDIRRDQGKALTFKHALASRYSVSVPSNDEDTSPEVSPPLGCDVRQRSRAAICDDSLQEMEAGGSGEDKWPRN----ANNARCTRKNSKTRAKVEHFADDAAPVASADAAAPGTSSATAPEAPLADVILSPDLPGSSQDRPPSDASWPTDPYVGVSVDGKKHPRWSGSRELRAYLRRTGYDKVE 348
             +V    C+ +D S+ DGP + ++ET + D C+LP    C   D+G+ E SG SV MYYDEACLEGGGG +GCG   V+ CRICFVN   W  +FP+ER PDW  CPCCVAD LGVTCQGG  G   T++  ++ ++    + EG     A L  ++ + LI A CC RDIR+    AL++KH  A+  + +    D DTSP+VSPP G +      A   DD  + ++   +            A       K   +RA     A    P A  + +A     A  P     DV    +LPG++  +PPSDASWP+DP VGVSV GKK+PRWSGSREL AYLRRTGY++++
Sbjct:  205 FEVSSSACNVLDSSSKDGPPATDAETSSGDLCALPADDACVGFDVGVAEVSGPSVGMYYDEACLEGGGGNTGCGGGGVTACRICFVNREFWLADFPDERYPDWLDCPCCVADALGVTCQGG--GETGTASDESIVEQAEAFYWEGGTLLYASLGGLIGLGLITALCCCRDIRKANQLALSYKHFRAAAVTQNKYKEDGDTSPDVSPPSGKNASVTPPAFPTDDRERGLQTAATXXXXXXXXXXXXAGVETLAAKKKPSRAAPRPTAKSGKP-ARRERSADARGRAAEPPDDFDDV----ELPGAAAYQPPSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEEMD 549          
BLAST of mRNA_H-elongata_contig55625.12988.1 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 9.780e-68
Identity = 158/386 (40.93%), Postives = 214/386 (55.44%), Query Frame = 0
Query:    8 CSAVDDSTADGPSSVESETDAKDYCSLPEATPCAEVDLGLHETSGVSVSMYYDEACLEGGGGVSGCGXXXVSTCRICFVNESRWETNFPNERVPDWGACPCCVADTLGVTCQGGF-TGTNFTSTSPAVWDEVLDSFTEGSIPALAVLSTILFMCLIVACCCIRDIRRDQGKALTFKHALASRYSVSVPSNDEDTSPEVSPPLGCDVRQRSRAAICDDSLQEME--AGGSGEDKWPRNANNARCTRKNSKTRAKVEHFADDAAPVASADAAAPGTSSATAPEAPLADVILSPDLPGSSQDRPPSDASWPTDPYVGVSVDGKKHPRWSGSRELRAYLRRTGYDKVEATTIAEGNEPVALPEKKERDQLGGGGRRGSSVVKAIKRAGSM 390
            C+ +D S+ DGP +  +ET   D+C+LP   PC ++D+G+ E  G SV MYYDE+CLEGGGG +GCG   V+ CRICFVN   W  +FP+ER PDW  CPCCVAD L VTCQ G  TGT   ++  ++ ++    + EG     A L  ++ + LI A CC RDIR+    AL++KH  A+  + +    + DTSP+VSPP G D      A   DD  + ++  A  +G +     A   + +R   +  A+ E  AD     A   AA P                   +LPG++  +PPSDASWP+DP VGVSV G K+PRWSGSREL AYLRRTGY++++     EG                G     ++VV+AIK  GSM
Sbjct:  310 CNVLDSSSKDGPPATVAETSLGDFCALPADDPCVDLDVGVAEVRGPSVGMYYDESCLEGGGGDTGCGGGGVTVCRICFVNREFWLADFPDERYPDWLDCPCCVADALVVTCQAGVETGT---ASDESIVEKAEAFYWEGGTLLCASLGGLIGLGLITALCCCRDIRKTNQLALSYKHFGAAAVTQNNYKEEGDTSPDVSPPSGKDASVTPPAFPADDRERGLQTTAAAAGVETL---AAKKKPSRAAPRPTARRERSAD-----ARGRAAEPPDD-------------FDGELPGAAAYQPPSDASWPSDPRVGVSVSGTKNPRWSGSRELNAYLRRTGYEEMDT----EGGXXXXXXXXXXXXXXXG-----NAVVQAIKTTGSM 662          
BLAST of mRNA_H-elongata_contig55625.12988.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.810e-8
Identity = 43/120 (35.83%), Postives = 53/120 (44.17%), Query Frame = 0
Query:   32 CSLPEATPCAEVDLGLHETSGVSVSMYYDEAC--LEGGGGVSGCGXXXVSTCRICFVNESRWETNFPNERVPDWGACPCCVADTLGVTCQGGFT--GTNFTSTSPAVWDEVLDSFTEGSI 147
            C LPE+ PC E     +   G+    YYD AC  +EG   + GC     S CR+CF N   +    P+E +PD+  CPCCV D      Q  F   G    S SPA     L     G I
Sbjct:  412 CILPESKPCTEATSFSNTNEGIG--DYYDPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIYE---QDAFNLDGQRCVSASPAPSSPALTEIPVGEI 526          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55625.12988.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G003_ECTSI5.520e-7142.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLX8_9PHAE9.780e-6840.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9X3_9PHAE2.810e-835.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..146
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 169..631
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55625contigH-elongata_contig55625:417..3203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55625.12988.1mRNA_H-elongata_contig55625.12988.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55625 417..3203 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55625.12988.1 ID=prot_H-elongata_contig55625.12988.1|Name=mRNA_H-elongata_contig55625.12988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=631bp
MQVEEGECSAVDDSTADGPSSVESETDAKDYCSLPEATPCAEVDLGLHET
SGVSVSMYYDEACLEGGGGVSGCGGGGVSTCRICFVNESRWETNFPNERV
PDWGACPCCVADTLGVTCQGGFTGTNFTSTSPAVWDEVLDSFTEGSIPAL
AVLSTILFMCLIVACCCIRDIRRDQGKALTFKHALASRYSVSVPSNDEDT
SPEVSPPLGCDVRQRSRAAICDDSLQEMEAGGSGEDKWPRNANNARCTRK
NSKTRAKVEHFADDAAPVASADAAAPGTSSATAPEAPLADVILSPDLPGS
SQDRPPSDASWPTDPYVGVSVDGKKHPRWSGSRELRAYLRRTGYDKVEAT
TIAEGNEPVALPEKKERDQLGGGGRRGSSVVKAIKRAGSMQRILADTGQM
DGWVASDSRPGHHDHSEVFCATTAAAAAAHLRVDLDIKIVRSDDVEGRRR
TRSRSRSRSRSQSRRGVSVAVAPTDDREVKQNPSKPKEAKHEPVRDGLGP
AREAPKASAPKDSTPTSAVRGGGGRGDGRRTRSTPSPRVDADYAPEVKVE
VRRGASRERQEPGGKPRRRKSQDPPRATANSGGRGREECENKLVADVGVV
EGGQGRVDGRHRRKSRQNSRLDMVSQEHQLR
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