prot_H-elongata_contig54365.12808.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig54365.12808.1
Unique Name	prot_H-elongata_contig54365.12808.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	854

Homology

[Close]

BLAST of mRNA_H-elongata_contig54365.12808.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 467 bits (1201), Expect = 8.980e-141
Identity = 365/736 (49.59%), Postives = 406/736 (55.16%), Query Frame = 0

Query:    3 PLHLRLSDGPLFAVSTVEAVVRGVDACRRWVKGAKALTSGRGR-----DGASAATLVQELQANRQLPYAV-----GGGLRTTLAHELSLKAPENPELAHHLGS--------VNGDEDDE-----MAGALDINGGEGSGSVGAAIDIATVSSVKNPRHVTTADIAASSILSVPTGFARNGAASTARVAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGAPRSTVKTSALVRAAAVAPPPPLFTNSSLGRTRGSRNQRTSPFNLKACSACKKDRASPIKCRVDRRHWEDPDWTDPPTRAWAMPAGFVEWLAREESGAVGQHPDGSAAVAAAAELAARVPAKATTTGIVAKAHAKAIASANSKPTGPRSIRGP--ETASSLLDRMLGTAALPPRVPTPVSAPVILAPRVAPGAPVPGGSGIKRTRCLAQGCTKGVARDAAFCSADCVVAAQRQAVQALVSSQNQLRVTRAPIPRRASAAKNVVGAGGAAAMVATXXXXXXXXXDAAMVGDDGTKRKGAEGAGGATAGVTGASSSVLAVAVSSPGAWTPQDEEEFAKGLEEVRAKSVPNSTQRFRQKVKDRFRELFAEGMNELKVDSMDVAVFSGVLAWDLEHELNAFSRSDRGVYKEKAQSLRFNIKFAKNPELFKDLLTGETSMKALCGMTTDELASSHLKEERKRIRDESYAGHLRQEDEGIEIVYKDGALQKIDKVKNEAKKQV 713
            PL LRL DGPL A+STVEAV RGVDACR+WV GA AL S  G      DGAS+A LVQELQANRQLPYAV     GGGLR TLAHELSLKAPE+PELAHHLGS         NG  DDE     MAGA+D++            D+   SS      +   D+               GAA+T     P                          XXXXXXX                 A  + ++T+++ RA     PPPLFTN +   TRGSRNQRTSPFNLKACSACKK R S + C  D      P                              H   +AA AAA   AA                                 R P  E+ASSLLDRMLGTAALPP  P PV    + APRVAPGAP  GG+G+KRTR L  GC K V RD AFCS DCVV+AQRQAV ALV+   +                              XXXXXXXXX    VG +G +       G                   S G  T +DE+ FAKGLE VRA+S   + QRFR KV DRFRELFA+GM EL VD+ D AV  G+LAWDLEHELNAFSR++RGVYKEKAQSLRFNIKFAKNPELFKDLL+G TSMK LCGM+TDELASSHLKEERKRIRDESYAGHLRQEDEG EIVYKDGALQKIDKVK EA KQ+
Sbjct:  557 PLSLRLGDGPLTALSTVEAVTRGVDACRQWVAGATALASPGGXXXXXLDGASSARLVQELQANRQLPYAVDGAGFGGGLRATLAHELSLKAPEHPELAHHLGSSVGSFGGVANGIVDDEDDAEGMAGAIDMS------------DVGWASSSDLDSAMAAIDVV--------------GAATTTEAPPPAPAPAVYPLAREQHRHSGATPAGSRGXXXXXXXRNGGTI----------SARAAGLQTASVARAV----PPPLFTNPAAPTTRGSRNQRTSPFNLKACSACKKGRIS-VDCGPDGERPGSP------------------------------HNARTAAAAAAVRDAAXXX---------------XXXXXXXXXXXXXXXRSPAAESASSLLDRMLGTAALPPPPPAPVVKAAVPAPRVAPGAPAIGGAGLKRTRKLTAGCDKPVGRDVAFCSDDCVVSAQRQAVHALVAYHQKXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXAVGANGEE-------GVXXXXXXXXXXXXXXXXXXSSGGCTAKDEQAFAKGLEAVRARSAQTAGQRFRHKVMDRFRELFADGMAELGVDAADAAVLCGMLAWDLEHELNAFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLSGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHLRQEDEGNEIVYKDGALQKIDKVKAEATKQM 1188

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54365.12808.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54365.12808.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LKF7_ECTSI	8.980e-141	49.59	TFIIS central domain-containing protein (Fragment)...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 571..673 e-value: 4.4E-13 score: 59.4
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 572..678 e-value: 1.8E-21 score: 76.7
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 569..690 score: 19.639
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 562..674 e-value: 1.5E-16 score: 62.6
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 566..665
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION ELONGATION FACTOR S-II	coord: 444..718

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54365	contig	H-elongata_contig54365:576..3885 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54365.12808.1	mRNA_H-elongata_contig54365.12808.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig54365 576..3893 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig54365.12808.1 ID=prot_H-elongata_contig54365.12808.1|Name=mRNA_H-elongata_contig54365.12808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=854bp
MDPLHLRLSDGPLFAVSTVEAVVRGVDACRRWVKGAKALTSGRGRDGASA
ATLVQELQANRQLPYAVGGGLRTTLAHELSLKAPENPELAHHLGSVNGDE
DDEMAGALDINGGEGSGSVGAAIDIATVSSVKNPRHVTTADIAASSILSV
PTGFARNGAASTARVAAPAVRVGAPVGRVGASAGRVGASSGRVEASSGRV
GASAGRVGASASRAAAPGAPRSTVKTSALVRAAAVAPPPPLFTNSSLGRT
RGSRNQRTSPFNLKACSACKKDRASPIKCRVDRRHWEDPDWTDPPTRAWA
MPAGFVEWLAREESGAVGQHPDGSAAVAAAAELAARVPAKATTTGIVAKA
HAKAIASANSKPTGPRSIRGPETASSLLDRMLGTAALPPRVPTPVSAPVI
LAPRVAPGAPVPGGSGIKRTRCLAQGCTKGVARDAAFCSADCVVAAQRQA
VQALVSSQNQLRVTRAPIPRRASAAKNVVGAGGAAAMVATATNNGSAGGD
AAMVGDDGTKRKGAEGAGGATAGVTGASSSVLAVAVSSPGAWTPQDEEEF
AKGLEEVRAKSVPNSTQRFRQKVKDRFRELFAEGMNELKVDSMDVAVFSG
VLAWDLEHELNAFSRSDRGVYKEKAQSLRFNIKFAKNPELFKDLLTGETS
MKALCGMTTDELASSHLKEERKRIRDESYAGHLRQEDEGIEIVYKDGALQ
KIDKVKNEAKKQVQAVASDTTIVDRKAAAAGKGTKKVRRSTGSPSSSSAA
GGVKIVVDGEIEGDGGKPKKKEAGGDKKRPGVGSGGGSGGEEGEDDGKGG
VAASRRLSGLELKRRLSGSSDAVGGGGGVEAAAVAKRIKMLSAGSPIIDD
VPK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003618	TFIIS_cen_dom
IPR036575	TFIIS_cen_dom_sf