prot_H-elongata_contig5192.12474.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5192.12474.1
Unique Nameprot_H-elongata_contig5192.12474.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length966
Homology
BLAST of mRNA_H-elongata_contig5192.12474.1 vs. uniprot
Match: A0A6H5J9W3_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W3_9PHAE)

HSP 1 Score: 627 bits (1616), Expect = 8.200e-205
Identity = 420/891 (47.14%), Postives = 472/891 (52.97%), Query Frame = 0
Query:    2 EPPSVTSGNKCPFTHLSSETVLQVHTFLDAGDLCRLSQTGKHMLSLCFDEATWAKLYYRSCTSLDGLLGEKEGGACPVRVMGVSGKWFWEGSREAFIRSWEMRKACNGRAFSTVKTQEAHIMWELAGLTTVAAGLLSDITSRYMNLPVAVGSMTPLRHMEYLLDSQTMRISALQRLLAWPGVCRSLLGKKEDDSSLPIGLWDQPGSFSGVNKGSRWRTLDGPPLAWSAASESPAAVAVHAGDLSGREARLTKEQRDAMRLLSANLAAFSLRSR----LRPRRTRWSAAPALVVGXXXXXXXXXXGTWRTATAWSVGDALETPAECSPHHHNIVAGPAIPYGMDRIELPARDSWLTRSPVPGPAAGPGGNSLVGHAGAQYSRWLAENNMSAPHHRASDATLVNPQPACGMGGLCWPTLYDLTMVKRRQRERLRDCFRRFFRGQKLDVRDPSGEWMGAVVLWAPPVCSRGISVPSAPLVAVMTHGQGGANWGAAVGGGATEA-APLPPTHGATDL-------------------TGSETMTPEWRRLLQLALLADGG----HMNANQGGGAGGAPAVAAGIXXXXXXVPQVAAAVVGVADEEKDVENFDGGD-----------WVTTGAPDGAQSFLASAVAAAADSRPWPQPLATLPQP------SGNPLHGGATLAAVETASAFSGGVSPTGIGNTGVPPGSSI---------------GSRPPGGGGNSILIHYEGHKSRYDEWIAVGSPRLAPYRSRTARPLSVTMQSVQKLVKWMSVRSDRGVPAPDCVEVSLSCPWIFHCAGGGVVTYRLPRSTTLGAVLTDFCHLAGISLWRATIHRANVHIAADMRMGRSDTKELDDRRTLEFLRVPSGSVLIVCVVPAMADILP 832
            EPP VTSGN CPFTHLSSETVLQVH FLDAGDL RLSQT KHMLSLCFDEATWAKLYYRSCTSLDGLLGEKEGGACPVRVMG SGKWFWEGSREAFIRSWEMRKAC+  AFST KTQE H+ WEL+GL TVAAGLL DI  R +       +   LRHME +LDS TMR+++LQRL+AWPGVCR LL +K++D SLPI  W +PG        S             A             D SGREARLT EQR+AMRLL  NLAA  +  R                     XXXXXXXXXX                TP E  P+HH+ VAGP IPYGM R+ELPAR   +   P    AA                              +  ATL N QPACGMGGL WPTLYDLT  KRRQRERLR+CFR+F RGQ+LDV DPSG WMGA V+WA          P    V  +  G  G + GA          AP     G                        G     PEWRR+LQL L+AD G    H N                 XXXXXX                                    WVTT AP  +QS                               + NP  G A                                              G+ PPG     + +HYEGHK +YDEWI+V S RLAP+RSRT RPLSVTMQ V+++VK  SV S RGVPAPDCVE+ +SCPW+ HCAGGGVVTYRLPRST L  VL DFCHLA ISL RAT+ RA + +A+D R G  D +ELDD RTLE+L V SGSVL+VCV P + D+ P
Sbjct:  227 EPPCVTSGNSCPFTHLSSETVLQVHAFLDAGDLGRLSQTSKHMLSLCFDEATWAKLYYRSCTSLDGLLGEKEGGACPVRVMGASGKWFWEGSREAFIRSWEMRKACSSAAFSTAKTQELHVKWELSGLLTVAAGLLYDIQDRRLGDAFPAANAGYLRHMERVLDSLTMRVASLQRLMAWPGVCRGLLSEKDEDRSLPIDAWGRPGQQRRSPSPSPXXHEKHHRCNAGADXXXXXXXXXXXXDSSGREARLTPEQREAMRLLFGNLAALPVARRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATARTPPEGFPYHHHTVAGPCIPYGMGRVELPAR---VGGEPPQVLAA------XXXXXXXXXXXXXXXXXXXXXXXXSGCATLQNAQPACGMGGLFWPTLYDLTAAKRRQRERLRECFRKFSRGQRLDVLDPSGVWMGAEVMWA----------PGDGGVGTLRVGGWGEDGGAXXXXXXXXXXAPAAEVAGXXXXXXXXXXXXXXXXXPLAGYPVGGNGGMPEWRRVLQLGLMADSGQAAPHPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVTTEAPKASQSLXXXXXXXXXXXXXXXXXXXXXXXXXXPVLANWNPGAGAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFGQGGTTPPGSNRKLVRVHYEGHKKKYDEWISVQSGRLAPFRSRTTRPLSVTMQFVEQVVKGASVSSSRGVPAPDCVEIFMSCPWVSHCAGGGVVTYRLPRSTKLCGVLADFCHLADISLRRATVKRARLFLASDFRDGCCDGEELDDHRTLEYLNVTSGSVLLVCVAPTVKDLAP 1098          
BLAST of mRNA_H-elongata_contig5192.12474.1 vs. uniprot
Match: D7FVT1_ECTSI (Ubiquitin-conjugating enzyme E2W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT1_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 2.830e-130
Identity = 293/745 (39.33%), Postives = 333/745 (44.70%), Query Frame = 0
Query:    2 EPPSVTSGNKCPFTHLSSETVLQVHTFLDAGDLCRLSQTGKHMLSLCFDEATWAKLYYRSCTSLDGLLGEKEGGACPVRVMGVSGKWFWEGSREAFIRSWEMRKACNGRAFSTVKTQEAHIMWELAGLTTVAAGLLSDITSRYMNLPVAVGSMTPLRHMEYLLDSQTMRISALQRLLAWPGVCRSLLGKKEDDSSLPIGLWDQPGSFSGVNKGSRWRTLDGPPLAWSAASESPAAVAVHAGDLSGREARLTKEQRDAMRLLSANLAAFSLRSRLRPRRTRWSAAPALVVGXXXXXXXXXXGTWRTATAWSVGDALETPAECSPHHHNIVAGPAIPYGMDRIELPARDSWLTRSPVPGPAAGPGGNSLVGHAGAQYSRWLAENNMSAPHHRASDATLVNPQPACGMGGLCWPTLYDLTMVKRRQRERLRDCFRRFFRGQKLDVRDPSGEWMGAVVLWAPPVCSRGISVPSAPLVAVMTHGQGGANWGAAVGGGATEAAPLPPTHG------------------------ATDLTGSETMTPEWRRLLQLALLADGGHMNANQGGGAGGAPAVAAGIXXXXXXVPQVAAAVVGVADEEKDVENFDGGDWVTTGA-PDGAQSFLASAVAAAADSRPWPQPLATLPQPSGNPLHGGATLAAVETASAFSGGVSPTGIGNTGVPPGSSIGSRPPGGGGNSILIHYEGHKSRYDEWIAVGSPRLAPYRSRTARPLSVTMQSVQKLVKWMSV 721
            EPP VTSGN CPFTHLSSETVLQVHTFLDAGDL RLSQT KHMLSLCFDEATWAKLYYRSCTSLDGLLGEKEGGACPVRVMG SGKWFWEGSREAFIRSWEMRKAC+  AFST KTQE H+ WEL+GL TVAAGLL DI +R +       +   LRHME +LDS TMR+++LQRL+AWPGVCR LL +K++D SLPI +W +PG                                               +QR                                                             +P+     H              R+ELPAR        +                                   +  ATL N QPACGMGGL WPTLYDL   KRRQRERLR+CFR+F RGQKLDVRDPSG WMGA V+WAP                    G GG     A G G    A                               A    G +   PEWRRLLQL L+ADGG           G+P  A                          + N++ G   T  A P G                                      L        F  G                 G+ PPG     + +HYEGHK +YDEWI+V S RLAP+RSRT RPLSVTMQ V+++V   SV
Sbjct:  124 EPPCVTSGNSCPFTHLSSETVLQVHTFLDAGDLGRLSQTSKHMLSLCFDEATWAKLYYRSCTSLDGLLGEKEGGACPVRVMGASGKWFWEGSREAFIRSWEMRKACSSAAFSTAKTQELHVKWELSGLLTVAAGLLHDIQNRRLGDVFPAANAGYLRHMERVLDSLTMRVASLQRLMAWPGVCRGLLSEKDEDGSLPIDVWGRPG-----------------------------------------------QQR------------------------------------------------------------RSPSXXXXXHEK----------QHRVELPARVGGEPPQVLA---------XXXXXXXXXXXXXXXXXXXXXXXXXSGWATLQNAQPACGMGGLFWPTLYDLMAAKRRQRERLRECFRKFSRGQKLDVRDPSGVWMGAEVMWAP--------------------GDGGVGTLRADGCGEDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFAGSPVGGDAGMPEWRRLLQLGLMADGGRALP-------GSPPPA--------------------------LANWNPGAGATLAAVPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALV-------FGQG-----------------GTTPPGSNRKLVRVHYEGHKKKYDEWISVQSGRLAPFRSRTTRPLSVTMQFVEQVVNGASV 665          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5192.12474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9W3_9PHAE8.200e-20547.14UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FVT1_ECTSI2.830e-13039.33Ubiquitin-conjugating enzyme E2W n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 6..107
e-value: 1.0E-6
score: 30.6
NoneNo IPR availableGENE3D2.30.30.140coord: 666..696
e-value: 2.2E-7
score: 32.7
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 8..65
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 666..697

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5192contigH-elongata_contig5192:345..6775 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5192.12474.1mRNA_H-elongata_contig5192.12474.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5192 56..6816 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5192.12474.1 ID=prot_H-elongata_contig5192.12474.1|Name=mRNA_H-elongata_contig5192.12474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=966bp
MEPPSVTSGNKCPFTHLSSETVLQVHTFLDAGDLCRLSQTGKHMLSLCFD
EATWAKLYYRSCTSLDGLLGEKEGGACPVRVMGVSGKWFWEGSREAFIRS
WEMRKACNGRAFSTVKTQEAHIMWELAGLTTVAAGLLSDITSRYMNLPVA
VGSMTPLRHMEYLLDSQTMRISALQRLLAWPGVCRSLLGKKEDDSSLPIG
LWDQPGSFSGVNKGSRWRTLDGPPLAWSAASESPAAVAVHAGDLSGREAR
LTKEQRDAMRLLSANLAAFSLRSRLRPRRTRWSAAPALVVGVGSGAGAAA
AGTWRTATAWSVGDALETPAECSPHHHNIVAGPAIPYGMDRIELPARDSW
LTRSPVPGPAAGPGGNSLVGHAGAQYSRWLAENNMSAPHHRASDATLVNP
QPACGMGGLCWPTLYDLTMVKRRQRERLRDCFRRFFRGQKLDVRDPSGEW
MGAVVLWAPPVCSRGISVPSAPLVAVMTHGQGGANWGAAVGGGATEAAPL
PPTHGATDLTGSETMTPEWRRLLQLALLADGGHMNANQGGGAGGAPAVAA
GIGNGGGPVPQVAAAVVGVADEEKDVENFDGGDWVTTGAPDGAQSFLASA
VAAAADSRPWPQPLATLPQPSGNPLHGGATLAAVETASAFSGGVSPTGIG
NTGVPPGSSIGSRPPGGGGNSILIHYEGHKSRYDEWIAVGSPRLAPYRSR
TARPLSVTMQSVQKLVKWMSVRSDRGVPAPDCVEVSLSCPWIFHCAGGGV
VTYRLPRSTTLGAVLTDFCHLAGISLWRATIHRANVHIAADMRMGRSDTK
ELDDRRTLEFLRVPSGSVLIVCVVPAMADILPTCPPAVPPRPGSGGSSGG
SDGSSTCRNDESSGRGRRDSSNDEDPSDASQDASDGGTGTTNHDPMEEDN
EEGRHVTGRNDFAASAFAVAPGSHHAGAGRGLDTETTVMHHAGTTAPVIP
SLEGVSNPARAAGSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR016197Chromo-like_dom_sf