prot_H-elongata_contig50836.12341.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig50836.12341.1
Unique Name	prot_H-elongata_contig50836.12341.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	529

Homology

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: D8LNH6_ECTSI (RNA polymerase sigma factor SigD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH6_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 7.000e-76
Identity = 249/744 (33.47%), Postives = 314/744 (42.20%), Query Frame = 0

Query:    4 NLGVVYNIVEGYLQSIKYGRGGSGGAGSGHAIFAKTDLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLSRYEPETVVGSKTRSRSHGSGSN----TSKRSTTSSSGSDGTRKSAKGDLGTVDKADGRAEDKERDKGKREVADEEVEEEGVVWDFSNHGQEELQT------------------------ELNRYLKRLRLEKDEEEHE--------------------------GTKWSK----RALAKGGSRRKR---------------------NGTS--------------------SKYQQETARRREERLRRLERDREAKEHQRKREA---------------------------------------------------------------------------------------------------------------------------EWERERMLQPMRVGSGAGSAVIGDLEPKPNSREASQLEHLSRLLWDGEE-PADFALTYGQRSDR 524
            NL +V  IV+ Y+ +  YGR            F + DL Q+ATVGLI AVE+FDP +GF FATY +WWVRKYL+E +QN NRM+RIP + AYRI+KVKR++D+L  ELGRAPTK E+A E   T++Q++AC +Q +  +  L+   G G        G  +  + +   E F     +    G+   P   G                   +Q SLR DL  A  RLLDATER+CLVLRYGL DG   S+E+TA IM+FCDPDDVRIIT QAM KLR+GCLP+E++KLMSYLS YEP T   SK +     S  N    T  R++TS + S G+R    GD  T   A G A D+    G    A E      VV DFS  G+                             E  R +   R  K E+EHE                          G K  +    R L  GG R                        NG+S                    SK+ QE  +   E  R L + R AK++  K  A                                                                                                                           EWERE+ ++P+ VG+GAGS VIGDLEP  NSREA QLEHLSRLLWDGEE PADF+L+YG++  R
Sbjct:  118 NLNLVDIIVKNYVGTFAYGR------------FTEKDLTQDATVGLIRAVEKFDPEKGFFFATYGRWWVRKYLHEGVQNHNRMVRIPNSAAYRIAKVKRVRDELEGELGRAPTKPEIALETDLTVQQVEACLEQDSFRIERLDGYMGHG-------FGMADTVFASHFGEGFLYGSDMLTHPGETPAPTVEG----------------EKVIQSSLRGDLSSAFVRLLDATERECLVLRYGLHDGVTNSIEQTAAIMDFCDPDDVRIITTQAMAKLRDGCLPEERKKLMSYLSVYEPSTPSYSKGKYDPSKSRRNKRLATDSRASTSGAISSGSRVGDGGDDSTTANAAGAAVDR----GDARTATERESSRRVVGDFSKIGKPGWMKPNGYESGSAGAGGAGAGSRFFRSKEEERRMWASRFSKMEQEHERDDRARSRGVSGGRTVMGFNEVRDERGEKQRREEEERQLWGGGDRSGYPTTGTGRNTGDKQQQDRGVGVNGSSNGGGRGVDNYKGDERRPWDFSKHGQEELQH--ELTRYLRKHRLAKKNAEKAAALKAENPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWEREQAVRPLPVGNGAGSVVIGDLEPVANSREADQLEHLSRLLWDGEEEPADFSLSYGKKPKR 820

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: A0A076MVM4_AMYME (RNA polymerase sigma factor n=11 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A076MVM4_AMYME)

HSP 1 Score: 122 bits (305), Expect = 4.660e-27
Identity = 87/257 (33.85%), Postives = 132/257 (51.36%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI AVE+FD ++GF+F+TYA WW+R+ +   + +Q R IR+P+ L  +++K+ R+K  L  +LGR  T EELAAE+G  +E++    D  A    SL+   G     P G+  F E+S   D                                       AE+A +   L++DLR  L   LD  E+Q + +RYGL DG P+++++  K       + VR I R+ M KLR+G   +  E+L +Y S
Sbjct:  132 DLIQEGNLGLIRAVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNEELAAESGIAVEKVADLLDH-ARDPVSLDMPVGTDEDAPLGD--FIEDSEATD---------------------------------------AESAVISGLLQDDLRRVL-ATLDEREQQVIRMRYGLDDGQPRTLDQIGKHFGL-SRERVRQIEREVMSKLRQG---ERAERLRAYAS 341

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: F6ELF5_HOYSD (RNA polymerase sigma factor n=3 Tax=Hoyosella TaxID=697025 RepID=F6ELF5_HOYSD)

HSP 1 Score: 121 bits (304), Expect = 4.880e-27
Identity = 86/257 (33.46%), Postives = 128/257 (49.81%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI A+E+FD A+GF+F+TYA WW+R+ +   + +Q+R IR+P+ L  +++K+ R+K +L  +LGR  T+ ELA E+G   E++    D     VS L+   G     P G+  F E+S   D                                       AE A +   L  D+R  L   LD  ERQ +  RYGL+DG P+++++  +I      + VR I R+ M KLR+G      EKL  Y S
Sbjct:  118 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATEAELARESGIPQEKIQDLLDHSRDPVS-LDMPVGNDEEAPLGD--FIEDSDATD---------------------------------------AETAVITRLLHSDIRTVL-STLDERERQVITFRYGLEDGQPRTLDQIGRIFGL-SRERVRQIEREVMTKLRQG---DRAEKLRGYAS 327

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: UPI000485557F (sigma-70 family RNA polymerase sigma factor n=1 Tax=Amycolatopsis taiwanensis TaxID=342230 RepID=UPI000485557F)

HSP 1 Score: 121 bits (304), Expect = 7.250e-27
Identity = 87/257 (33.85%), Postives = 132/257 (51.36%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI AVE+FD ++GF+F+TYA WW+R+ +   + +Q R IR+P+ L  +++K+ R+K  L  +LGR  T EELAAE+G + E++    D  A    SL+   G     P G+  F E+S   D                                       AE+A +   L++DLR  L   LD  E+Q + LRYGL DG P+++++  +       + VR I R+ M KLR+G   +  E+L +Y S
Sbjct:  139 DLIQEGNLGLIRAVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATHEELAAESGISAEKVSDLLDH-ARDPVSLDMPVGTEEDAPLGD--FIEDSEATD---------------------------------------AESAVISGLLQDDLRRVL-ATLDDREQQVIRLRYGLDDGQPRTLDQIGRHFSL-SRERVRQIEREVMSKLRQG---ERAERLRAYAS 348

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: A0A1F2YCI3_9ACTN (RNA_pol_sigma70 domain-containing protein n=8 Tax=Bacteria TaxID=2 RepID=A0A1F2YCI3_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 8.950e-27
Identity = 79/248 (31.85%), Postives = 126/248 (50.81%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMS---LREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCL 284
            DL+QE  +GL+ AVE FD  RGF+F+TYA WW+R+ +   + +++R IR+P+ +  R+ K+ R + Q    +GR PT+EELA     T+E++D   + G     SL+   G             E++ + D  E                                    +E+AF ++    LRE++  A+ R+LD  ER  + LRYGL++G P S+ ET K++     + VR+I R+A+ KLR+  L
Sbjct:  103 DLIQEGNIGLMRAVELFDWRRGFKFSTYATWWIRQGITRAIADRSRSIRLPVHIHDRLRKLNRTRFQFAQTMGREPTREELAKALDTTIEEIDDLTEMGRREPLSLQSPVG-------------EDTELGDLIEEVD---------------------------------SESAFNEVEDALLREEIGTAVDRVLDERERHVVALRYGLENGQPLSLRETGKVLGLSG-ERVRLIEREALRKLRDSNL 303

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: Q8VM94_RHOFA (RNA polymerase sigma factor n=24 Tax=root TaxID=1 RepID=Q8VM94_RHOFA)

HSP 1 Score: 120 bits (301), Expect = 1.160e-26
Identity = 87/257 (33.85%), Postives = 131/257 (50.97%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI A+E+FD A+GF+F+TYA WW+R+ +   + +Q+R IR+P+ L  +++K+ R+K +L  +LGR  T EEL++E+G  +E++    D     VS L+   G     P G+  F E+S                                           AE A +   L  D+R  L   LD  E+Q + LRYGL DG P+++++  K+      + VR I R+ MVKLR+G      EKL SY S
Sbjct:  114 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELSSESGIAVEKIADLLDHSRDPVS-LDMPVGSDEEAPLGD--FIEDSEATS---------------------------------------AENAVIAGLLHSDVRVVL-GTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGL-SRERVRQIEREVMVKLRQG---DRAEKLRSYAS 323

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: A0A558AF17_9PSEU (RNA polymerase sigma factor n=10 Tax=Amycolatopsis TaxID=1813 RepID=A0A558AF17_9PSEU)

HSP 1 Score: 119 bits (299), Expect = 3.400e-26
Identity = 87/257 (33.85%), Postives = 130/257 (50.58%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI AVE+FD ++GF+F+TYA WW+R+ +   + +Q R IR+P+ L  +++K+ R+K  L  +LGR  T EELAAE+G   E++    D  A    SL+   G     P G+  F E+S   D                                       AE+A +   L++DLR  L   LD  E+  + LRYGL DG P+++++  K       + VR I R+ M KLR+G   +  E+L +Y S
Sbjct:  138 DLIQEGNLGLIRAVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATHEELAAESGIPAEKIGDLLDH-ARDPVSLDMPVGTEEDAPLGD--FIEDSEATD---------------------------------------AESAVISGLLQDDLRRVL-GTLDDREQSVIRLRYGLDDGQPRTLDQIGKHFGL-SRERVRQIEREVMAKLRQG---ERAERLRAYAS 347

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: A0A537YVY8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537YVY8_9ACTN)

HSP 1 Score: 118 bits (295), Expect = 3.600e-26
Identity = 77/248 (31.05%), Postives = 126/248 (50.81%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMS---LREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCL 284
            DL+QE  +GL+ AVE FD  RGF+F+TYA WW+R+ +   + +++R IR+P+ +  R+ K+ R + Q    +GR PT+EELA     T++++D   + G     SL+   G             E++ + D  E                                    ++AAF ++    LRE++  A+ ++LD  ER  + LRYGL++G P S+ ET K++     + VR+I R+A+ KLR+  L
Sbjct:   78 DLIQEGNIGLMRAVELFDWRRGFKFSTYATWWIRQGITRAIADRSRSIRLPVHIHDRLRKLNRTRFQFAQSMGREPTREELAKALDTTVDEIDDLTEMGRREPLSLQSPVG-------------EDTELGDLIEEVD---------------------------------SDAAFNEVEDQLLREEIGGAVDKVLDERERHVVALRYGLENGQPLSLRETGKVLGLSG-ERVRLIEREALRKLRDSNL 278

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BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: A0A1H0D0B4_ALLAB (RNA polymerase sigma factor n=2 Tax=Allokutzneria TaxID=1137960 RepID=A0A1H0D0B4_ALLAB)

HSP 1 Score: 119 bits (297), Expect = 4.150e-26
Identity = 87/257 (33.85%), Postives = 129/257 (50.19%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI AVE+FD  +GF+F+TYA WW+R+ +   + +Q R IR+P+ L  +++K+ R+K  L  +LGR  T EELAAE+G    ++    D  A    SL+   G     P G+  F E+S   D                                       AE+A +   L++DLR  L   LD  E+  + LRYGL DG PK++++  ++      + VR I R+ M KLR+G   +  EKL +Y S
Sbjct:  115 DLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATHEELAAESGLPEGKIADLLDH-ARDPVSLDMPVGTEEDAPLGD--FIEDSEATD---------------------------------------AESAVISTLLQDDLRRVL-STLDDREQHVIRLRYGLDDGQPKTLDQIGRLFGL-SRERVRQIEREVMSKLRQG---ERAEKLRAYAS 324

[Close]

BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Match: W7J218_9PSEU (RNA polymerase sigma factor n=13 Tax=Pseudonocardiaceae TaxID=2070 RepID=W7J218_9PSEU)

HSP 1 Score: 117 bits (294), Expect = 1.060e-25
Identity = 89/257 (34.63%), Postives = 130/257 (50.58%), Query Frame = 0

Query:   40 DLMQEATVGLICAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKVKRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSGFGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEAGTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAPKSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLS 296
            DL+QE  +GLI AVE+FD  +GF+F+TYA WW+R+ +   + +Q R IR+P+ L  +++K+ R+K  L   LGR  TK+ELA EAG T E++    D  A    SL+   G     P G+       +I D                           GEA         AE+A +   L++D+R  L   LD  E+  + LRYGL DG P+++++  K       + VR I R+ M KLR+G   +  EKL +Y S
Sbjct:  115 DLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQSLGREATKDELAKEAGLTPEKVADLLDH-ARDPVSLDMPVGAEEDAPLGD-------FIQD---------------------------GEA-------TDAESAVISGLLQDDMRRVL-ATLDDREQSVIRLRYGLDDGQPRTLDQIGKSFGL-SRERVRQIEREVMSKLRQG---ERAEKLRAYAS 324

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot

BLAST of mRNA_H-elongata_contig50836.12341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LNH6_ECTSI	7.000e-76	33.47	RNA polymerase sigma factor SigD n=2 Tax=Ectocarpu...	[more]
A0A076MVM4_AMYME	4.660e-27	33.85	RNA polymerase sigma factor n=11 Tax=Pseudonocardi...	[more]
F6ELF5_HOYSD	4.880e-27	33.46	RNA polymerase sigma factor n=3 Tax=Hoyosella TaxI...	[more]
UPI000485557F	7.250e-27	33.85	sigma-70 family RNA polymerase sigma factor n=1 Ta...	[more]
A0A1F2YCI3_9ACTN	8.950e-27	31.85	RNA_pol_sigma70 domain-containing protein n=8 Tax=...	[more]
Q8VM94_RHOFA	1.160e-26	33.85	RNA polymerase sigma factor n=24 Tax=root TaxID=1 ...	[more]
A0A558AF17_9PSEU	3.400e-26	33.85	RNA polymerase sigma factor n=10 Tax=Amycolatopsis...	[more]
A0A537YVY8_9ACTN	3.600e-26	31.05	Sigma-70 family RNA polymerase sigma factor n=1 Ta...	[more]
A0A1H0D0B4_ALLAB	4.150e-26	33.85	RNA polymerase sigma factor n=2 Tax=Allokutzneria ...	[more]
W7J218_9PSEU	1.060e-25	34.63	RNA polymerase sigma factor n=13 Tax=Pseudonocardi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 382..406
None	No IPR available	COILS	Coil	Coil	coord: 436..466
None	No IPR available	GENE3D	1.10.601.10		coord: 1..86 e-value: 5.4E-19 score: 70.9
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..295
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 268..279 score: 41.08 coord: 64..72 score: 62.8 coord: 40..53 score: 54.38
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 40..77 e-value: 4.1E-9 score: 36.1
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 97..143 e-value: 7.7E-8 score: 32.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 213..301 e-value: 1.3E-8 score: 36.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 87..136 e-value: 8.0E-11 score: 43.8
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 2..281 e-value: 3.6E-15 score: 54.0
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 36..85
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 209..281
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 84..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig50836	contig	H-elongata_contig50836:1290..3742 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig50836.12341.1	mRNA_H-elongata_contig50836.12341.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig50836 34..3742 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig50836.12341.1 ID=prot_H-elongata_contig50836.12341.1|Name=mRNA_H-elongata_contig50836.12341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=529bp
VETNLGVVYNIVEGYLQSIKYGRGGSGGAGSGHAIFAKTDLMQEATVGLI
CAVERFDPARGFRFATYAQWWVRKYLNECLQNQNRMIRIPITLAYRISKV
KRLKDQLRMELGRAPTKEELAAEAGCTLEQLDACFDQGALSVSSLEQLSG
FGRVRPGGNSGFREESYIADETEFFTPPQTLPQAQGQAQVPQGSGGGGEA
GTMAMVPQGAEAAFMQMSLREDLRDALFRLLDATERQCLVLRYGLKDGAP
KSVEETAKIMEFCDPDDVRIITRQAMVKLREGCLPKEKEKLMSYLSRYEP
ETVVGSKTRSRSHGSGSNTSKRSTTSSSGSDGTRKSAKGDLGTVDKADGR
AEDKERDKGKREVADEEVEEEGVVWDFSNHGQEELQTELNRYLKRLRLEK
DEEEHEGTKWSKRALAKGGSRRKRNGTSSKYQQETARRREERLRRLERDR
EAKEHQRKREAEWERERMLQPMRVGSGAGSAVIGDLEPKPNSREASQLEH
LSRLLWDGEEPADFALTYGQRSDRPSIP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000943	RNA_pol_sigma70
IPR007627	RNA_pol_sigma70_r2
IPR007624	RNA_pol_sigma70_r3
IPR036388	WH-like_DNA-bd_sf
IPR014284	RNA_pol_sigma-70_dom
IPR013325	RNA_pol_sigma_r2
IPR013324	RNA_pol_sigma_r3/r4-like