prot_H-elongata_contig50438.12283.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50438.12283.1
Unique Nameprot_H-elongata_contig50438.12283.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length187
Homology
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A6H5JND9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JND9_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 7.090e-69
Identity = 112/190 (58.95%), Postives = 141/190 (74.21%), Query Frame = 0
Query:    4 KGKSSGCTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPMVLKGESRSGPRGVAGPNITHIIHDLSFGPP--NSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVV----GSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGLFVR 187
            +G   GCTLDG V VERAAG++++HV HHDP+R +  G      KGE+RSGP+ VAG N+TH IHD  FGPP    VG  +  L   TFV E GSG+ KYSLKVVPI HRR++G E  ++TYS+NV FV E++++      SL+LGVEF+YDF+ VMV+YTDTR+S+ E ITSVCAIVGG++TVSGLFVR
Sbjct:  120 QGGGLGCTLDGTVTVERAAGTIMIHVMHHDPSRVIFTGRFLARTKGETRSGPKAVAGQNMTHKIHDFGFGPPVKGPVGVGRNSLARSTFVSEAGSGLVKYSLKVVPIFHRRMHGAEVNTHTYSSNVAFVPEADVLQDLSSSSLLLGVEFSYDFTSVMVKYTDTRRSMFELITSVCAIVGGIYTVSGLFVR 309          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A7S2UYF2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYF2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.650e-22
Identity = 59/181 (32.60%), Postives = 101/181 (55.80%), Query Frame = 0
Query:   10 CTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPMVLKGESRSGPRGVAGPNITHIIHDLSFGPPNSVGE---AKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKS-YTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGLFV 186
            CT++G++++ R  GS+ +  +   P    S+  L  +    ++ G      PN++H+IH+L FG     G+     +PL       + GSG+ +Y +K+VP ++  ++    K  Y YS    FV +S  +     LG+E +YDFSP+MV Y + ++S+ +F+T++CAI+GGV T S L V
Sbjct:  137 CTVEGSLKLPRVGGSIDI-ASRRKPVDIASL--LSALFLNTAQLGNV----PNVSHVIHELWFGDKILGGDQMAGSLPLKDACNAVDHGSGLFRYEVKIVPTTYEWLHTHRVKEHYQYSVVENFVKDSAGISSLSTLGLEISYDFSPIMVEYVEQKQSIFQFLTNLCAIMGGVFTTSSLLV 310          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A7S3FGL0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FGL0_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.080e-19
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 0
Query:   62 NITHIIHDLSFGP--PNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            N++H+IH LSFG   P  +     PL     +   GSG+ +Y +KVVP ++    G    S  YS    F +  +   G ++ GV F YD SP+MV++T+ +KS   F+TS+CAIVGGV TV+G+
Sbjct:   35 NVSHVIHHLSFGVHYPGQIN----PLDDSQSILSTGSGVFQYFIKVVPTTYHFSSGRTVDSCQYSVTDQFKSAHDPSKGFVLPGVFFIYDISPIMVKFTEKQKSFTYFLTSLCAIVGGVFTVAGI 155          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A0M0JNQ4_9EUKA (Endoplasmic reticulum-golgi intermediate compartment protein 3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JNQ4_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 2.350e-19
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 0
Query:   62 NITHIIHDLSFGP--PNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            NI+H+IH LSFG   P+ V     PL G T V   GSG+ +Y  KVVP ++    G   +S  YS    F +  +   G ++ GV   YD SP+MV++T+ R S   F+TS+CAIVGGV TV+G+
Sbjct:  245 NISHVIHSLSFGVHYPSRVN----PLDGATAVLRNGSGVFQYFAKVVPTTYVYADGKTIESCQYSVTDQFKSAHDPSKGFVLPGVFIIYDISPIMVKFTEKRPSFTYFLTSLCAIVGGVFTVAGI 365          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A7S3TYF1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TYF1_9SPIT)

HSP 1 Score: 91.3 bits (225), Expect = 4.260e-19
Identity = 66/181 (36.46%), Postives = 92/181 (50.83%), Query Frame = 0
Query:    5 GKSSGCTLDGAVEVERAAGSLVLHVTHHDPAR-FVSMGGLPMVLKGESRSGPRGVAGPNITHIIHDLSFGPPNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            G   GC L G +EV + AG+      H  P R F S  G    L  E +    G    N++H+IH LSFG  +  G    PL     +   GSG+ +Y +KVVP ++    G    S  YS    F   ++   G ++ GV F YD SP+MV + + R +   F+TS+CAIVGGV TV+G+
Sbjct:   67 GVEEGCNLFGFLEVNKVAGNF-----HIAPGRAFESAQGQ---LIHEFKPFDSGTY--NVSHVIHSLSFGV-HYPGRHN-PLDNSHMILRNGSGVFQYFIKVVPTTYSFANGRTLTSCQYSVTEQFKRANDHSAGYVLPGVFFIYDISPIMVTFVEERPTFSYFLTSLCAIVGGVFTVAGI 235          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A7J6V1K7_THATH (Endoplasmic reticulum-golgi intermediate compartment protein n=2 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V1K7_THATH)

HSP 1 Score: 91.7 bits (226), Expect = 5.140e-19
Identity = 62/180 (34.44%), Postives = 95/180 (52.78%), Query Frame = 0
Query:    9 GCTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPM--VLKGESRSGPRGVAGPNITHIIHDLSFGP--PNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            GC ++G +EV + AGS      H  PA+      + +  +L  ++ +        NI+H I+ LSFG   P +V     PL G  +  +  SGM +Y +KVVP  ++ + G +  S  +S    F +         + GV F YDFSP+ V +T+   SLL F+T++CAIVGG+ TVSG+
Sbjct:  102 GCNMEGFLEVNKVAGSF-----HFAPAKSFYQSNIHLFDLLAVQTENS-------NISHRINKLSFGQKFPGAVN----PLDGVEWTQQASSGMYQYFIKVVPTIYKDIRGRKINSNQFSVTEHFRSADGYTQS--LPGVFFFYDFSPIKVSFTEENVSLLHFMTNICAIVGGIFTVSGI 263          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: R1EXL7_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EXL7_EMIHU)

HSP 1 Score: 92.8 bits (229), Expect = 7.500e-19
Identity = 63/176 (35.80%), Postives = 92/176 (52.27%), Query Frame = 0
Query:    9 GCTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPMVLKGESRSGPRGVAGPNITHIIHDLSFGPPNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            GC L G +EV + AG++     H  P +        +V + +    P    G NI+H+IH LSFG      ++  PL   T +   GSG+ +Y LKVVP ++    G    S  YS    F +  +   G ++ GV F YD SP+MV + + R +   F+TS+CAIVGGV TV+G+
Sbjct:  226 GCNLFGFLEVNKVAGNV-----HLAPGKAFQSAQGQLVHEFK----PFDSHGYNISHVIHSLSFGVHYPGRQS--PLDESTMILHNGSGVFQYYLKVVPTTYVFASGRNLTSCQYSVTEQFKSAHDPRNGFVLPGVFFIYDISPIMVTFREERPAFSYFLTSLCAIVGGVFTVAGI 390          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: UPI00193A5AB0 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193A5AB0)

HSP 1 Score: 91.7 bits (226), Expect = 1.700e-18
Identity = 63/176 (35.80%), Postives = 92/176 (52.27%), Query Frame = 0
Query:    9 GCTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPMVLKGESRSGPRGVAGPNITHIIHDLSFGPPNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            GC L G +EV R AG+      H  P +   MG + +       SG    A  N+TH I+ LSFG  N  G+   PL       E    + +Y LK+VP ++ ++ G + K+  +S        S     + + G+  +Y+ SP+MVRYT+ R+S   F+TSVCAI+GGV TV+GL
Sbjct:  201 GCRLHGYLEVNRVAGNF-----HVSPGKSYEMGHMHVHDMAAFGSG----AKYNLTHTINHLSFGD-NYPGQI-FPLDNHYVYAEAVEMVFQYYLKIVPTTYIKLSGDKLKTNQFSVTKHQKQLSSSGAETSLPGLFVSYELSPMMVRYTEKRRSFFHFLTSVCAIIGGVFTVAGL 365          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A7S2IP65_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IP65_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 1.970e-18
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 0
Query:   62 NITHIIHDLSFGP--PNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGL 184
            N++H IH LSFG   PN V     PL         GSG+ +Y +KVVP +++   G    S  YS    F +  +   G ++ GV F YD SP+MV++T+ R +   F+TS+CAIVGGV TV+G+
Sbjct:  265 NVSHTIHSLSFGVHYPNRVN----PLDDAVATVVNGSGVFQYFVKVVPTTYKYADGNTVDSCQYSVTDQFKSAHDPSKGFVLPGVFFIYDISPIMVKFTEKRSTFTYFLTSLCAIVGGVFTVAGV 385          
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Match: A0A2R6QPC2_ACTCC (Endoplasmic reticulum-Golgi intermediate compartment protein n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QPC2_ACTCC)

HSP 1 Score: 90.9 bits (224), Expect = 2.240e-18
Identity = 58/179 (32.40%), Postives = 91/179 (50.84%), Query Frame = 0
Query:    9 GCTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPMVLKGESRSGPRGVAGPNITHIIHDLSFGPPNSVGEAKIPLPGRTFVPEGGSGMAKYSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDFSPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGLFVR 187
            GC + G ++V+R AG+   H++ H    FV+     M+ +G +          N++HIIHDLSFGP         PL G T +  G SG  KY +K+VP  +R +      +  +S    + T ++    +    V F YD SP+ V   + R+S L FIT +CA++GG   ++G+  R
Sbjct:  170 GCRVYGVLDVQRVAGNF--HISVHGLNIFVAQ----MIFEGTNHV--------NVSHIIHDLSFGP--KYPGIHNPLDGTTRILRGNSGTFKYYIKIVPTEYRYISKEVLPTNQFSVTEYYSTANDRTWPA----VYFLYDLSPITVTIREERRSFLHFITRLCAVLGGTFALTGMLDR 328          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50438.12283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JND9_9PHAE7.090e-6958.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UYF2_9STRA1.650e-2232.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3FGL0_9EUKA1.080e-1940.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0JNQ4_9EUKA2.350e-1943.20Endoplasmic reticulum-golgi intermediate compartme... [more]
A0A7S3TYF1_9SPIT4.260e-1936.46Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7J6V1K7_THATH5.140e-1934.44Endoplasmic reticulum-golgi intermediate compartme... [more]
R1EXL7_EMIHU7.500e-1935.80Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
UPI00193A5AB01.700e-1835.80endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A7S2IP65_9EUKA1.970e-1840.80Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A2R6QPC2_ACTCC2.240e-1832.40Endoplasmic reticulum-Golgi intermediate compartme... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012936Endoplasmic reticulum vesicle transporter, C-terminalPFAMPF07970COPIIcoated_ERVcoord: 6..184
e-value: 3.5E-26
score: 92.4
NoneNo IPR availablePANTHERPTHR10984ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEINcoord: 7..185
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 187..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..186
NoneNo IPR availableTMHMMTMhelixcoord: 164..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50438contigH-elongata_contig50438:3082..3642 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50438.12283.1mRNA_H-elongata_contig50438.12283.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50438 3082..3642 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50438.12283.1 ID=prot_H-elongata_contig50438.12283.1|Name=mRNA_H-elongata_contig50438.12283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
RKGKGKSSGCTLDGAVEVERAAGSLVLHVTHHDPARFVSMGGLPMVLKGE
SRSGPRGVAGPNITHIIHDLSFGPPNSVGEAKIPLPGRTFVPEGGSGMAK
YSLKVVPISHRRVYGGEAKSYTYSANVGFVTESEMVVGSLILGVEFAYDF
SPVMVRYTDTRKSLLEFITSVCAIVGGVHTVSGLFVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012936Erv_C