prot_H-elongata_contig50332.12266.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50332.12266.1
Unique Nameprot_H-elongata_contig50332.12266.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length469
Homology
BLAST of mRNA_H-elongata_contig50332.12266.1 vs. uniprot
Match: A0A6H5K490_9PHAE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K490_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.200e-58
Identity = 162/348 (46.55%), Postives = 183/348 (52.59%), Query Frame = 0
Query:    1 RASSNDLYIVQQLMNDSVSLLVYSPGGYEEEGFDREAVGEGGARGGGRRRLRGDSSGH-QVGRLRSFLRPHMLRTPXXXXXXXXXXXXGSTSLSSGSAGPAYLRKHSFFDLDXXXXXXXYSHNAVRKQEEDIATLKGAAP------------------------------ASSAQPGAQSTAESGGGRGVGAFSDSSAQAGAVVASAGESPVSAGMDGATMAALNAKFRDGLELRGDSGSGGAGVTVEPLGRRGRKSVAGALERRRVMMACKALHAQIKHYNTSFQKEYGHPPRRRERVPLVSTINQYKTWRQFICDDASVQLQSFYRGYSERKRHPEVPRLLRKQAP 317
            R SSNDLYIVQQLMNDSVSLLVY+    EE+G + +  G     G GRRR  G+  G  Q GRLRSFLRPHML  P              +S    + GPAYLRKHSFFDLD XXXXXX                                                   AS   PG             GA       A  VV +   S  +  +D A  AA     R G    G +  GGAG    P GR GR SVAG+LERRR+++AC+ L AQI HY  +FQ EYGHPPR RER PLVST  QYK+W+QFI DDAS QLQ+ YRGY ERKRHPEVPRLLRK+AP
Sbjct:  419 RPSSNDLYIVQQLMNDSVSLLVYAGSEGEEDGEESDGSGXXXXDGAGRRRGHGELFGWPQAGRLRSFLRPHMLHAPPPAVTAAHFGPPSLSSAGGDTGGPAYLRKHSFFDLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASCRSPG-------------GAADKPVDAASGVVVTDNGSKATPAVDEAAKAAAGTVGRSG----GSAWGGGAGDN--PTGRGGR-SVAGSLERRRILLACRTLRAQIDHYEMNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQATYRGYRERKRHPEVPRLLRKEAP 746          
BLAST of mRNA_H-elongata_contig50332.12266.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.340e-39
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 0
Query:  205 GDSGSGGAGVTVEPLGRRGRKSVAGALERRRVMMACKALHAQIKHYNTSFQKEYGHPPRRRERVPLVSTINQYKTWRQFICDDASVQLQSFYRGYSERKRHPEVPRLLRKQAP 317
            GD+  GGAG   +P GR GR+SVAG+LERRR+M+AC+ L AQI HY  +FQ EYGHPPR RER PLVST  QYK+W+QFI DDAS QLQ+ YRGY ERKRHPEVPRLLRK+AP
Sbjct:  290 GDAWGGGAGA--DPTGRGGRRSVAGSLERRRMMLACRTLRAQIDHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQATYRGYRERKRHPEVPRLLRKEAP 400          
BLAST of mRNA_H-elongata_contig50332.12266.1 vs. uniprot
Match: A0A7R9U7W0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.990e-11
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0
Query:  223 GRKSVAGALERRRVMMACKALHAQIKHYNTSFQKEYGHPPRRRERVPLVSTINQYKTWRQFICDDASVQLQSFYRGYSERK 303
            G + VAG+LERRR++ AC+ L  QI  +   F + +GHPP+  ER PL ST  QY++W++FI +DA+  +Q  +R +  +K
Sbjct:  254 GPRRVAGSLERRRMVQACRVLRTQITKFEERFAETHGHPPKGAERAPLGSTYAQYRSWKRFIREDAAQHIQRCFREHRRKK 334          
BLAST of mRNA_H-elongata_contig50332.12266.1 vs. uniprot
Match: A0A7S2RA23_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA23_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.740e-8
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  232 ERRRVMMACKALHAQIKHYNTSFQKEYGHPPRRRERVPLVSTINQYKTWRQFICDDASVQLQSFYRG--YSERKRHPEVPR 310
            +RR+++ AC+ L AQ+K +     +  GHPPR RER PL+ST  QY+ W++ I D A+ +LQ+  RG  Y  R +    PR
Sbjct:  267 QRRQLLHACRCLRAQVKRFEEDHCQRTGHPPRGRERGPLLSTYAQYREWKKNIRDYAACRLQALVRGLLYRARMQRSSEPR 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50332.12266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K490_9PHAE1.200e-5846.55Rho-GAP domain-containing protein (Fragment) n=1 T... [more]
D8LSI7_ECTSI2.340e-3970.80Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7R9U7W0_9STRA1.990e-1143.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2RA23_9STRA3.740e-841.98Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 435..462
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 286..314
score: 8.242

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50332contigH-elongata_contig50332:508..3933 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50332.12266.1mRNA_H-elongata_contig50332.12266.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50332 508..3933 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50332.12266.1 ID=prot_H-elongata_contig50332.12266.1|Name=mRNA_H-elongata_contig50332.12266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=469bp
RASSNDLYIVQQLMNDSVSLLVYSPGGYEEEGFDREAVGEGGARGGGRRR
LRGDSSGHQVGRLRSFLRPHMLRTPPPPPPPVTAHFGGSTSLSSGSAGPA
YLRKHSFFDLDEDDDDEEYSHNAVRKQEEDIATLKGAAPASSAQPGAQST
AESGGGRGVGAFSDSSAQAGAVVASAGESPVSAGMDGATMAALNAKFRDG
LELRGDSGSGGAGVTVEPLGRRGRKSVAGALERRRVMMACKALHAQIKHY
NTSFQKEYGHPPRRRERVPLVSTINQYKTWRQFICDDASVQLQSFYRGYS
ERKRHPEVPRLLRKQAPPPPPPSSSSSSAASAASPPRSVLSGATPLSPAG
QAYAPPSAASMRGAATSTSAPSVAAAAAAASGASGTGGPSASALPSGSGS
NASAATVAAVAPGSGDGVGGTAAVASTSAVDEEARAALTAELKELLEDKR
AIKSQLKDFDKSFSRRTGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS