prot_H-elongata_contig5018.12244.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5018.12244.1
Unique Nameprot_H-elongata_contig5018.12244.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length930
Homology
BLAST of mRNA_H-elongata_contig5018.12244.1 vs. uniprot
Match: A0A6H5JU15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU15_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.240e-57
Identity = 170/394 (43.15%), Postives = 233/394 (59.14%), Query Frame = 0
Query:    4 PVDLRTAQVQVGELRREVACMADRVAKQTDERKRLAEIAFQAQDEATCLKKQLQEIQQKQQQKGEMDGKAGNAVDGLPQLHEETGFRQGEVTGVVTGKAAPSGREFELEIEKCKSETAKREAQEEARHATV-------ALEKALAKVRELTRNEEIMQEERLEEQLRRAREQCKXXXXXXXXXQLKAKLFAANTRAEILRAKVLAQDKERTEKSLRAAAVAIAGKARAMVEAFVARNERMAARVACLRDDVKEHEHRVSQLKETSTLLEAAGRSANEETLKARQQLQEAKEGLVAARERATDLETRLGPLESQCREAQSAQEHLRELVTAEGARRASLEQQLSQAKRMSEEVIEMERSXXXXXXXXXXXXXRARDELAMATVEAAGSAMRQAAQ 390
            P+    A++++GEL +E+ACMADR+ KQ +ER RLA++AF+AQDE   L++QL+E QQ+++Q G  DG   +A  G    + E G    E      G+     R  +LEIEK ++                       AL+   AKVRELT + E  +E+ LEE+LRR RE+CK         Q+K KLF AN RAEILRA+   +++ R E+ +R+AAVA+AG+A  +V   VARN RM+ RVA  R  V++ +  VS+LKE S LLEA+GRSA +E    R+QL  A E L AA+E + +LE RLG LE +C+EA +AQE LR+ V   G RR      LS+ K   E VI +ER+             R+RDELA+A   AAGSA+RQ A+
Sbjct:  744 PMGEEEARLRIGELHQELACMADRLTKQAEERNRLADVAFEAQDEVIKLRQQLEEFQQRERQNGG-DGAPSDATSGS---NGEGGGPSWEGVTAGRGEDETDARVLQLEIEKLETXXXXXXXXXXXXXXXXXXXXXXXALDXXRAKVRELTLSAEAQREKMLEEKLRRDRERCKQDERAIEEHQIKVKLFIANKRAEILRAQASEEERLRAEQVVRSAAVAVAGRAFEVVRELVARNARMSRRVAGWRAIVEKRQRHVSELKERSALLEASGRSAQDEAEAVREQLARAMEDLEAAKESSGELEARLGSLEKECQEAHTAQERLRKWVEKAGERR------LSEVKHDGENVIGIERARRQSTERRLGLAERSRDELAVAAASAAGSALRQVAE 1127          
BLAST of mRNA_H-elongata_contig5018.12244.1 vs. uniprot
Match: D8LAV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 3.780e-40
Identity = 128/304 (42.11%), Postives = 181/304 (59.54%), Query Frame = 0
Query:    4 PVDLRTAQVQVGELRREVACMADRVAKQTDERKRLAEIAFQAQDEATCLKKQLQEIQQKQQQKGEMDGKAGNAVDGLPQLHEETGFRQGEVTGVVTGKAAPSGREFELEIEKCKSETAKREAQEEARHATV-------ALEKALAKVRELTRNEEIMQEERLEEQLRRAREQCKXXXXXXXXXQLKAKLFAANTRAEILRAKVLAQDKERTEKSLRAAAVAIAGKARAMVEAFVARNERMAARVACLRDDVKEHEHRVSQLKETSTLLEAAGRSANEETLKARQQLQEAKEGLVAARERATDLE 300
            P+    A++++GEL +E+ACM DR+ KQ +ER RLA++AF+AQDEA  L++QL++ QQ++++ G  DG   +A  G                     +     R  +LEIEK ++E                      AL++A AKVRELT + E  +E+ LEE+LRR REQCK         Q+K KLF AN RAEILRA+   +++ R E+ +R+AAVA+AG+A  +V   V+RN RM+ RVA  R  V+E + RVS+LKE S LLEA+GRSA +E    R+QL  A E L AA+E + +LE
Sbjct:  763 PMGEGEARLRIGELHQELACMTDRLTKQAEERNRLADVAFEAQDEAIKLRQQLEQFQQRERKNGG-DGAPSDATSGXXXXXXXXXXXX---XXXXCAEDETDARVLQLEIEKLETEXXXXXXXXXXXXXXXXXXXXXXALDEARAKVRELTLSAEAQREKMLEEKLRRDREQCKQDERAIEEHQIKVKLFIANKRAEILRAQASEKERLRAEQVVRSAAVAVAGRAFEVVRELVSRNARMSRRVAGWRAIVEERQRRVSELKERSALLEASGRSAQDEAEAVREQLARAMEDLEAAKESSGELE 1062          
BLAST of mRNA_H-elongata_contig5018.12244.1 vs. uniprot
Match: D8LAV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.840e-7
Identity = 72/233 (30.90%), Postives = 90/233 (38.63%), Query Frame = 0
Query:  743 SVTALTPESGEKMALGR------DPSNLPTV---FCEGKGSTASTS--SHIPPVQKRPRKLLGGGASRCKTPKGKDKAAN------------------------------------SPSSSSTQDTARTTAVVAVSNDQAAGDCSSGVISRVGVGPRSGRRASSWIQSADGQNGGGKGAFGGASNRAVKIKKRSNSSIFSMRGKPPIRGSLFQGFLDPRKGFIVPKLKDGASR 928
            S++A     G   + GR      +P  +P+      +GKG    T+  S I P  KRPRKLLGGG SRCKTP+                                            P S         +A VA +    AG    GV + V   P  G          D            A   A K  K S +SI +MRGK   + +LF+GFLDP+KGF VPKLK GA R
Sbjct:  177 SISAKKRRDGGGKSTGRASTAVQEPDKVPSAPKPSTKGKGEDLLTTKLSPIAPPPKRPRKLLGGGTSRCKTPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGPKSGGXXXXXXXSANVAAARGMVAG----GVATGVRPSPAVGGNXXXXXXXXD----------AAAVKPAFKPLKLSTTSILAMRGKSTSKTALFKGFLDPKKGFKVPKLKVGAKR 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5018.12244.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JU15_9PHAE7.240e-5743.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAV4_ECTSI3.780e-4042.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LAV5_ECTSI6.840e-730.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableCOILSCoilCoilcoord: 122..182
NoneNo IPR availableCOILSCoilCoilcoord: 279..302
NoneNo IPR availableCOILSCoilCoilcoord: 233..267
NoneNo IPR availableCOILSCoilCoilcoord: 331..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5018contigH-elongata_contig5018:942..10600 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5018.12244.1mRNA_H-elongata_contig5018.12244.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5018 942..10600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5018.12244.1 ID=prot_H-elongata_contig5018.12244.1|Name=mRNA_H-elongata_contig5018.12244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=930bp
MLLPVDLRTAQVQVGELRREVACMADRVAKQTDERKRLAEIAFQAQDEAT
CLKKQLQEIQQKQQQKGEMDGKAGNAVDGLPQLHEETGFRQGEVTGVVTG
KAAPSGREFELEIEKCKSETAKREAQEEARHATVALEKALAKVRELTRNE
EIMQEERLEEQLRRAREQCKRDEEAMEERQLKAKLFAANTRAEILRAKVL
AQDKERTEKSLRAAAVAIAGKARAMVEAFVARNERMAARVACLRDDVKEH
EHRVSQLKETSTLLEAAGRSANEETLKARQQLQEAKEGLVAARERATDLE
TRLGPLESQCREAQSAQEHLRELVTAEGARRASLEQQLSQAKRMSEEVIE
MERSRRQSTERRLGAVERARDELAMATVEAAGSAMRQAAQGEKERRLSVE
RRLGEAADTTKKSVECVAVSCAGPVLRTRRASKRVSSSGDSCIWDESLPA
KALSQTTEPAGLPGNTKPTNGEATHAIPIPADASATTWKLRQRSKVNYAE
GVADSKSTDGEVGAGHAHPHVPARSEGARSLVVPASDSSEASAEEDARSP
PCEIPSARVRRVRKKASAVGGLVGQTATSTIYIGSDNCGLPESAGAFGTR
AYAGAITKLAFQQKSAGKGQPKKVAGTGVDGDGSRGKIPARGRQLKATKA
DTLSTLKSGHSSSNKRARSSLFSSSAAPAWSSEASFVEGEEQDEENNKGK
AAQTREKSTGRRRDKKNASVGGDGGDSPEKVPAHSQRQKAAKSVTALTPE
SGEKMALGRDPSNLPTVFCEGKGSTASTSSHIPPVQKRPRKLLGGGASRC
KTPKGKDKAANSPSSSSTQDTARTTAVVAVSNDQAAGDCSSGVISRVGVG
PRSGRRASSWIQSADGQNGGGKGAFGGASNRAVKIKKRSNSSIFSMRGKP
PIRGSLFQGFLDPRKGFIVPKLKDGASRP*
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