prot_H-elongata_contig48801.12049.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48801.12049.1
Unique Nameprot_H-elongata_contig48801.12049.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length361
Homology
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 2.610e-69
Identity = 140/363 (38.57%), Postives = 204/363 (56.20%), Query Frame = 0
Query:    5 MIAALGWET----RQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLL-VASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMAR 361
            ++AA+  E     R  D+  A++++D++E++++ LPE        +  L K++YGL  A   W       L    F +  AD CVFR I    VVV   V+VDD+  +    +CD  Q  RDL +  P+K+LG+  +Y GC   RD +AGTL   Q  Y + +   FGV     IP   G K LS+ D        EE+   P++E++G+LMW AT TRP+I+ A   +A++  +P   HWRA      Y+ RT DLGIT+      G  +  +VDADY +    R SVSGG+VM  GG ISWFSR QK    + +E+EYV+LA+++ ++ FLRQV  FM P   +  I + EDN+GAI++A+
Sbjct:   23 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD--QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQ 376          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.500e-67
Identity = 140/363 (38.57%), Postives = 204/363 (56.20%), Query Frame = 0
Query:    5 MIAALGWET----RQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLL-VASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMAR 361
            ++AA+  E     R  D+  A++++D++E++++ LPE        +  L K++YGL  A   W       L    F +  AD CVFR I    VVV   V+VDD+  +    +CD  Q  RDL +  P+K+LG+  +Y GC   RD +AGTL   Q  Y + +   FGV     IP   G K LS+ D        EE+   P++E++G+LMW AT TRP+I+ A   +A++  +P   HWRA      Y+ RT DLGIT+      G  +  +VDADY +    R SVSGG+VM  GG ISWFSR QK    + +E+EYV+LA+++ ++ FLRQV  FM P   +  I + EDN+GAI++A+
Sbjct:  197 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD--QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQ 550          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.770e-65
Identity = 134/363 (36.91%), Postives = 199/363 (54.82%), Query Frame = 0
Query:    5 MIAALGWETR----QLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLL-VASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMAR 361
            M+AAL  E        DV+ A++ +++EE++Y+ LP+        +  L K++YGL  A   W       L A  F++  AD CVFR I    VV+   V+VDD+  V    +CD+  A  DL    P+K+LGE  +Y GC   R++  G LT  Q  +   +A  +GV     +P  +G K LS  D+ +   E       P++E+VG+LMW AT TRP+I+ A   +A++  +P   HW AA     Y  RT   GI++      G  L  + DAD+ +    R SVSGG+V   GGA+SWFSR QK    + +E+EYVAL ++V ++ FLRQ+  FM P + +  I + EDN+GAI++A+
Sbjct:   47 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA--DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATEF------PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQ 400          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 5.960e-65
Identity = 140/363 (38.57%), Postives = 204/363 (56.20%), Query Frame = 0
Query:    5 MIAALGWET----RQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLL-VASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMAR 361
            ++AA+  E     R  D+  A++++D++E++++ LPE        +  L K++YGL  A   W       L    F +  AD CVFR I    VVV   V+VDD+  +    +CD  Q  RDL +  P+K+LG+  +Y GC   RD +AGTL   Q  Y + +   FGV     IP   G K LS+ D        EE+   P++E++G+LMW AT TRP+I+ A   +A++  +P   HWRA      Y+ RT DLGIT+      G  +  +VDADY +    R SVSGG+VM  GG ISWFSR QK    + +E+EYV+LA+++ ++ FLRQV  FM P   +  I + EDN+GAI++A+
Sbjct:  718 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD--QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQ 1071          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.330e-63
Identity = 133/353 (37.68%), Postives = 197/353 (55.81%), Query Frame = 0
Query:   10 GWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLLVASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPID-VAIKIHEDNEGAIKMAR 361
            G      DV  AY  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L    F++ +ADPCVFR+++ EVVV+   +YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS IP+  G     K +        EE  + P +E +G++MW +T +RP++SFA   +A+    P   HW A QK   YL  T+DLGITY  + G G  L+ +VDA Y    + R SVSG    + G  +S  S+ Q + + + +E+EY+A  E V +  F+R V  F+ P     +IK+ EDN+GAI + +
Sbjct:  842 GMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQ 1183          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.590e-63
Identity = 133/353 (37.68%), Postives = 197/353 (55.81%), Query Frame = 0
Query:   10 GWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLLVASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPID-VAIKIHEDNEGAIKMAR 361
            G      DV  AY  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L    F++ +ADPCVFR+++ EVVV+   +YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS IP+  G     K +        EE  + P +E +G++MW +T +RP++SFA   +A+    P   HW A QK   YL  T+DLGITY  + G G  L+ +VDA Y    + R SVSG    + G  +S  S+ Q + + + +E+EY+A  E V +  F+R V  F+ P     +IK+ EDN+GAI + +
Sbjct: 1221 GMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQ 1562          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.620e-63
Identity = 133/353 (37.68%), Postives = 197/353 (55.81%), Query Frame = 0
Query:   10 GWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLLVASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPID-VAIKIHEDNEGAIKMAR 361
            G      DV  AY  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L    F++ +ADPCVFR+++ EVVV+   +YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS IP+  G     K +        EE  + P +E +G++MW +T +RP++SFA   +A+    P   HW A QK   YL  T+DLGITY  + G G  L+ +VDA Y    + R SVSG    + G  +S  S+ Q + + + +E+EY+A  E V +  F+R V  F+ P     +IK+ EDN+GAI + +
Sbjct: 1384 GMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQ 1725          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 216 bits (551), Expect = 3.890e-63
Identity = 129/362 (35.64%), Postives = 208/362 (57.46%), Query Frame = 0
Query:    2 VLSMIAALGWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLLVASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGV--TKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWF-SRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMA 360
            VLS++ A+ + T QLD D A+  +D++E++++E+P    ++   +  L KA+YGL  A   W +          F+   AD CV+ ++  +  V    +YVDD+++A+ T  +  +    L S F +K+LGEA + LG  I  DR  GTL   Q +Y+  +  RF     K  + P   G K LSK+ SP TDAE E+MR  PY+ ++G+L++  T TRP++++   +L++F +NPG  HW+AA +  +YL  T+D GI Y G  G    L  + DAD+G+  + R SVSG ++MM GGA   F S+ Q+  A + +E+EY+AL+    ++ + R   + +      A ++ EDN+GAI +A
Sbjct:    7 VLSVVVAMAYVTEQLDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVC-LYVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKAV-LEVYTDADWGSNLDGRRSVSG-IMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALA 364          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 4.030e-63
Identity = 132/353 (37.39%), Postives = 197/353 (55.81%), Query Frame = 0
Query:   10 GWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLLVASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPID-VAIKIHEDNEGAIKMAR 361
            G      DV  AY  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L    F++ +ADPCVFR+++ +VVV+   +YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS IP+  G     K +        EE  + P +E +G++MW +T +RP++SFA   +A+    P   HW A QK   YL  T+DLGITY  + G G  L+ +VDA Y    + R SVSG    + G  +S  S+ Q + + + +E+EY+A  E V +  F+R V  F+ P     +IK+ EDN+GAI + +
Sbjct: 1241 GMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQ 1582          
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.300e-62
Identity = 134/364 (36.81%), Postives = 200/364 (54.95%), Query Frame = 0
Query:    1 MVLSMIAALGWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVXXXVYVDDLL-VASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALS-KSDSPQTDAEIEEMRQIPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYLWRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAISWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMAR 361
            M+ ++   L  E    D+D A++ A ++E+I++ +PE       ++  L K++YGL  A   W       L A  F++  AD CVFR +    VV+   V+VDD+  V +  +CD  Q  +DL    P+K LGE  +Y GC+  RDR AG LT  Q  Y + + ER+GV     IP     K     +D P  +         P++ +VG+L+W A +TRP+I+ +   +A+++  P   HW+AA     Y  RT   GI +      G  L  +VDADY +    R SVSGGVVM AGGAI+WFS+ QK    + + +E+VA+A+M  ++ FLRQV  FM P  +   I ++EDNEGAI++A+
Sbjct:   23 MLAALACELDLEFCHSDIDQAFVRAPLKEDIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRFVEGGEVVLLLEVHVDDIFAVGTKERCD--QFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH--------PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAK 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48801.12049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE2.610e-6938.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.500e-6738.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE1.770e-6536.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE5.960e-6538.57Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KSG8_9PHAE1.330e-6337.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.590e-6337.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.620e-6337.68Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6A3J8V8_9STRA3.890e-6335.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE4.030e-6337.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG67_9PHAE1.300e-6236.81Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..171
e-value: 4.8E-30
score: 105.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 203..334
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 96..170
NoneNo IPR availablePANTHERPTHR11439:SF242coord: 203..334
NoneNo IPR availablePANTHERPTHR11439:SF242coord: 96..170
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 50..322

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48801contigH-elongata_contig48801:3..1085 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48801.12049.1mRNA_H-elongata_contig48801.12049.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48801 3..1373 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48801.12049.1 ID=prot_H-elongata_contig48801.12049.1|Name=mRNA_H-elongata_contig48801.12049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp
MVLSMIAALGWETRQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLK
KAMYGLVHAGLLWSKRFGIELEAKNFQRSQADPCVFRRILHEVVVVVIVV
YVDDLLVASATKCDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGT
LTFDQHQYIQTMAERFGVTKTSIIPSVAGGKALSKSDSPQTDAEIEEMRQ
IPYQEIVGALMWAATMTRPEISFAAHELAKFNDNPGPTHWRAAQKASQYL
WRTQDLGITYGGEPGGGTKLSAWVDADYGTFPNTRCSVSGGVVMMAGGAI
SWFSRVQKVTAAALSESEYVALAEMVNKLRFLRQVKEFMTPPIDVAIKIH
EDNEGAIKMAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like