prot_H-elongata_contig47364.11850.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47364.11850.1
Unique Nameprot_H-elongata_contig47364.11850.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length80
Homology
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.120e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 0
Query:    5 RDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGVLAIVEVRK 65
            RD +AR+EDES GYVMS +VM+R+ARKCPS+RD+LE CGNPLP LVQ+ AE +L IVE  K
Sbjct:  529 RDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPRLVQQHAEDILEIVENAK 589          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.380e-13
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    5 RDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGVLAIV 61
            RDA+AR EDES GYVMS ++MLR+AR  P++ D L  C  PLPPLVQ++++ V+A++
Sbjct:  291 RDALAREEDESPGYVMSAYLMLRLARAAPASHDALVRCAAPLPPLVQQRSDEVIALL 347          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A816G701_9BILA (Hypothetical protein (Fragment) n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A816G701_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 4.720e-9
Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    5 RDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGVLAIVE 62
            RD +AR+EDESTGYV+  +++LRI+   P T +++ +C NP P LV++    +  IV+
Sbjct:   35 RDKLARTEDESTGYVLPNYMLLRISEMLPKTAEDIRACCNPTPILVRQNLHDIYQIVQ 92          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A093J177_EURHL (Exosome component 10 (Fragment) n=1 Tax=Eurypyga helias TaxID=54383 RepID=A0A093J177_EURHL)

HSP 1 Score: 60.5 bits (145), Expect = 7.650e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGVLAIVE 62
            +F  RD VAR EDESTGYV+  H++L+IA K P     + +C NP+PPLV+++   +  +++
Sbjct:  387 LFAWRDKVARQEDESTGYVLPNHMLLKIAEKLPKEPQGIIACCNPVPPLVRQQINELHLLIQ 448          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A671VE32_SPAAU (Exosome component 10 n=2 Tax=Sparus aurata TaxID=8175 RepID=A0A671VE32_SPAAU)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-8
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGVLAIVE------VRKYIF 68
            +F  RD +AR EDESTGYV+  H+M++I+ + P     + +C NP+PPLV+++   +  +V+      + KY+F
Sbjct:  514 LFAWRDKLARQEDESTGYVLPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQVNALHLLVQQAREMPLLKYLF 587          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A672ZGD7_9TELE (Exosome component 10 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZGD7_9TELE)

HSP 1 Score: 59.7 bits (143), Expect = 1.420e-8
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGV-LAIVEVRKYI 67
            +F  RD +AR EDESTGYVM  H+M++I+ + P     + +C NP+PPLV+++   + L I E R+ +
Sbjct:  513 LFAWRDKLARQEDESTGYVMPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQINELHLLIQEAREIL 580          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A672ZH80_9TELE (Exosome component 10 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZH80_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 1.940e-8
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGV-LAIVEVRK 65
            +F  RD +AR EDESTGYVM  H+M++I+ + P     + +C NP+PPLV+++   + L I E R+
Sbjct:  488 LFAWRDKLARQEDESTGYVMPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQINELHLLIQEARE 553          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A672ZIV7_9TELE (Exosome component 10 n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZIV7_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 1.940e-8
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGV-LAIVEVRK 65
            +F  RD +AR EDESTGYVM  H+M++I+ + P     + +C NP+PPLV+++   + L I E R+
Sbjct:  472 LFAWRDKLARQEDESTGYVMPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQINELHLLIQEARE 537          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A672ZIM6_9TELE (Exosome component 10 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZIM6_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 1.940e-8
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGV-LAIVEVRK 65
            +F  RD +AR EDESTGYVM  H+M++I+ + P     + +C NP+PPLV+++   + L I E R+
Sbjct:  513 LFAWRDKLARQEDESTGYVMPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQINELHLLIQEARE 578          
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Match: A0A672ZII7_9TELE (Exosome component 10 n=3 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZII7_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 1.950e-8
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    1 MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLVQRKAEGV-LAIVEVRK 65
            +F  RD +AR EDESTGYVM  H+M++I+ + P     + +C NP+PPLV+++   + L I E R+
Sbjct:  514 LFAWRDKLARQEDESTGYVMPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQINELHLLIQEARE 579          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47364.11850.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI2.120e-1968.85HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIH7_9STRA8.380e-1356.14Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A816G701_9BILA4.720e-943.10Hypothetical protein (Fragment) n=1 Tax=Didymodact... [more]
A0A093J177_EURHL7.650e-943.55Exosome component 10 (Fragment) n=1 Tax=Eurypyga h... [more]
A0A671VE32_SPAAU1.050e-837.84Exosome component 10 n=2 Tax=Sparus aurata TaxID=8... [more]
A0A672ZGD7_9TELE1.420e-842.65Exosome component 10 n=1 Tax=Sphaeramia orbiculari... [more]
A0A672ZH80_9TELE1.940e-843.94Exosome component 10 n=1 Tax=Sphaeramia orbiculari... [more]
A0A672ZIV7_9TELE1.940e-843.94Exosome component 10 n=2 Tax=Sphaeramia orbiculari... [more]
A0A672ZIM6_9TELE1.940e-843.94Exosome component 10 n=1 Tax=Sphaeramia orbiculari... [more]
A0A672ZII7_9TELE1.950e-843.94Exosome component 10 n=3 Tax=Sphaeramia orbiculari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.80coord: 1..74
e-value: 3.0E-17
score: 64.3
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 4..63
IPR002121HRDC domainPFAMPF00570HRDCcoord: 3..61
e-value: 1.5E-10
score: 40.9
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 1..71
score: 11.808
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 2..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47364contigH-elongata_contig47364:3867..4106 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47364.11850.1mRNA_H-elongata_contig47364.11850.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47364 3867..4127 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47364.11850.1 ID=prot_H-elongata_contig47364.11850.1|Name=mRNA_H-elongata_contig47364.11850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MFLARDAVARSEDESTGYVMSLHVMLRIARKCPSTRDELESCGNPLPPLV
QRKAEGVLAIVEVRKYIFETKQHKRTPSFA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR010997HRDC-like_sf