prot_H-elongata_contig46078.11683.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46078.11683.1
Unique Nameprot_H-elongata_contig46078.11683.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length219
Homology
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BLAST of mRNA_H-elongata_contig46078.11683.1 vs. uniprot
Match: A0A6H5JQ98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ98_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.750e-23
Identity = 65/124 (52.42%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:    1 MMGRFFNNHPLMITFDKNIKELMALLAALPLADVQKLPVQINPYFITGALPAGASPQQPGSPLYRPH----------APRGFPIGGGVAHNGNGNGRGSISG---VAAVGDVGASTVPTPSLVP 111
            +MGRFF+NHPLMI FDKN+KE+ ALLA LP A++QKLPVQINPYFITG+LPAG   QQPGSP +             AP G  I G V  + +GNG    SG       G V     P+P+L P
Sbjct:  213 VMGRFFDNHPLMIAFDKNVKEVTALLATLPFAEMQKLPVQINPYFITGSLPAGVGVQQPGSPSHHVQPXXXXXXXXXAPSGVGIAGHVDESSSGNGAVERSGQNDAQPAGGVAEQLDPSPALAP 336
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BLAST of mRNA_H-elongata_contig46078.11683.1 vs. uniprot
Match: D7G053_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G053_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 9.890e-9
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0 
Query:    1 MMGRFFNNHPLMITFDKNIKELMALLAALPLADVQKLPVQ 40
            +MGRFF+NHPLMI FDKN+KE+ ALLA LP A++QKLPVQ
Sbjct:   12 VMGRFFDNHPLMIAFDKNVKEVTALLATLPFAEMQKLPVQ 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46078.11683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ98_9PHAE2.750e-2352.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G053_ECTSI9.890e-975.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 22..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46078contigH-elongata_contig46078:2685..3614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46078.11683.1mRNA_H-elongata_contig46078.11683.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46078 1389..4062 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46078.11683.1 ID=prot_H-elongata_contig46078.11683.1|Name=mRNA_H-elongata_contig46078.11683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
MMGRFFNNHPLMITFDKNIKELMALLAALPLADVQKLPVQINPYFITGAL
PAGASPQQPGSPLYRPHAPRGFPIGGGVAHNGNGNGRGSISGVAAVGDVG
ASTVPTPSLVPQQQQRQPSPLAPPPSQPLQPQVVPQAADVMATTKAAVSA
AVAAIADLQPTGEVGGPAVPGVGKVAAQAQAGPETASTAPTTPAEDPRVE
AGKDCKGAGGGEESSPAG*
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