prot_H-elongata_contig46015.11675.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46015.11675.1
Unique Nameprot_H-elongata_contig46015.11675.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length426
Homology
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Match: D7G629_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G629_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.750e-76
Identity = 225/349 (64.47%), Postives = 249/349 (71.35%), Query Frame = 0
Query:    2 GDATVRSIGRHCPNIKSLSMVELTRTTDRSLKXXXXXXXXXXLLDSSSDLNMLERSHRTRVPKLGTDGIREMCVGTRGLEVLRLNGACKITDDALKAVGANCSQLEELSCNLVTDVGIAAVARGSPFLRHLGAGGCVQLTD---ASVRVVAIRAGRRLRVLDVTGCRKVTDHSLEAIGEHCGGLESLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRVQLAGERLPFVARDPGKRELRLCNHPCRVFNAHVQERVEWTASAITVQRIVRGQLCRLRWKRVQQRKACATKALRTGLSSIMATRLFRKQLEWRRTEH 347
            GD TVR I RHCP + SLSMVELTRT      XXXXXXX   LLDSSSD+N+LE SHRTRVPKLG DG+RE+ +GT  L VLRLNGACKITDD+L AVG+NC                                          ASVRV+A RAG  LRVLD           LEAIG HC GLE LTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GSRVQLAGERLP V R+PG R LR C  PCRVFN+++Q R EWTA+AITVQR +RG+LCRLRW+R +QRKA A   LR+ LS++MA RLFR++LE RR+EH
Sbjct:  355 GDGTVRDIARHCPGLTSLSMVELTRTXXXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVRVLAARAGGGLRVLDFXXXXXXXXXXLEAIGSHCRGLEGLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGSRVQLAGERLPLVVREPGTRVLRPCALPCRVFNSYIQRRAEWTAAAITVQRTLRGKLCRLRWERGEQRKAWAAMVLRSKLSAVMARRLFRRRLEQRRSEH 703          
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Match: UPI00053C24EB (F-box/LRR-repeat protein 4 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C24EB)

HSP 1 Score: 62.4 bits (150), Expect = 9.060e-7
Identity = 44/130 (33.85%), Postives = 60/130 (46.15%), Query Frame = 0
Query:   59 RTRVPKLGTDGIREMCVGTRGLEVLRLNGACKITDDALKAVGANCSQLEELSCN--LVTDVGIAAVARGSPFLRHLGAGGCVQLTDASVRVVAIRAGRRLRVLDVTGCRKVTDHSLEAIGEHCGGLESLT 186
            R     L   G+  +  G   LE L L     I+   L ++   C  L+ L      + D G+AAV +    L  L    C  LTDA +  VA   GR L+ L V    K+TD S+EA+G HC  LE+L+
Sbjct:  128 RLEPSSLSDAGLTALASGFPQLESLSLIWCSNISSQGLISLAEKCISLKSLDLQGCYIGDQGLAAVGKICKQLEELNLRFCEGLTDAGLIDVAAGCGRSLKSLGVAASAKITDLSMEAVGNHCKFLETLS 257          
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Match: A0A6A4M4G5_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4M4G5_9ERIC)

HSP 1 Score: 60.5 bits (145), Expect = 4.120e-6
Identity = 42/133 (31.58%), Postives = 63/133 (47.37%), Query Frame = 0
Query:   80 LEVLRLNGACKITDDALKAVGANCSQLEELS---CNLVTDVGIA------------------------AVARGSPFLRHL---GAGGCVQLTDASVRVVAIRAGRRLRVLDVTGCRKVTDHSLEAIGEHCGGL 182
            L ++ L GAC++TDDALKA+ A+   L+ ++   C+L+TD GI+                         VA      +HL      G   + D  V  V  + GR ++ LD+  C K+T+ S+E IG  C GL
Sbjct:  482 LAIISLKGACRLTDDALKALVASTPALQSINLGECSLLTDTGISLLAACLGATLRELYIDNCHRIDARVVAHAILEFKHLEVLSVAGIQTVCDEFVVEVITKCGRNMKGLDLADCVKLTNTSMEVIGNTCSGL 614          
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Match: A0A1W4V5P2_DROFC (F-box/LRR-repeat protein 13 n=9 Tax=melanogaster group TaxID=32346 RepID=A0A1W4V5P2_DROFC)

HSP 1 Score: 59.3 bits (142), Expect = 8.690e-6
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 0
Query:   78 RGLEVLRLNGACKITDDALKAVGANCSQLEELS---CNLVTDVGIAAVARGSPFLRHLGAGGCVQLTDASVRVVAIRAGRRLRVLDVTGCRKVTDHSLEAIGEHCGGLESL 185
            RGL+ L L G   ITD ALK  G    +L  LS   C+ +T  G  AV +  P L  L    C+ + D +VR++ +   +RLR+L+++ C K+T  S+  I  H   L  L
Sbjct:  494 RGLKELNLRGCRNITDRALKH-GLKLPELRALSLGYCSRLTPAGFEAVTQNCPSLEALCVSSCMTMDDETVRII-VSGLKRLRILNLSNCAKLTLQSIHYILAHAHNLVEL 602          
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Match: K3X2Z6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Z6_GLOUD)

HSP 1 Score: 57.4 bits (137), Expect = 2.240e-5
Identity = 25/75 (33.33%), Postives = 43/75 (57.33%), Query Frame = 0
Query:  111 CNLVTDVGIAAVARGSPFLRHLGAGGCVQLTDASVRVVAIRAGRRLRVLDVTGCRKVTDHSLEAIGEHCGGLESL 185
            C L++  G+  V +    L   G  GC ++ DA++  +A   G ++R + V G   ++DHSL+A+ +HC GL+ L
Sbjct:  162 CRLMSSAGVNTVVQECKKLSEFGFKGCPKVNDAAMLAIATHCGAQVRRVSVGGSGNISDHSLQALADHCSGLQEL 236          
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Match: A0A218WGT7_PUNGR (EIN3-binding F-box protein 1-like n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218WGT7_PUNGR)

HSP 1 Score: 57.8 bits (138), Expect = 2.710e-5
Identity = 53/208 (25.48%), Postives = 86/208 (41.35%), Query Frame = 0
Query:    3 DATVRSIGRHCPNIKSLSMVELTRTTDRSLKXXXXXXXXXXLLDSSSDLNMLERSHRTRVPKLGTDGIREMCVGTRGLEVLRLNGACKITDDALKAVG-ANCSQLEELS---CNLVTDVGIAAVARGSPFLRHLGAGG---------------------------CVQLTDASVRVVAIRAGRRLRVLDVTGCRKVTDHSLEAIGEHC 179
            D  +  +G  CPN+K + +      +D  L            + ++  L  L+     RV ++G  G+   C G R L+ L L+    + D  +     ++C  L  LS   C    + G+A V +  P L HL   G                           C  +TD ++  + +  G  L++L++ GCRKVTD SLEAI ++C
Sbjct:  372 DVGLEVLGNGCPNLKQVCLQRCYFISDNGL---------LDFVRAAGSLESLQLMELNRVSQVGVIGVLSNC-GAR-LKTLALSECMGVKDFPVAVPDLSSCQSLRCLSIQNCPGFGNAGVALVGKLCPNLHHLEFTGLWGIKDAALLPLLESCEDGLVKVNLSDCPNVTDEAISALVMIHGGTLQMLNIDGCRKVTDASLEAIADNC 568          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46015.11675.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G629_ECTSI1.750e-7664.47Hypothetical leucine rich repeat calmodulin bindin... [more]
UPI00053C24EB9.060e-733.85F-box/LRR-repeat protein 4 isoform X1 n=2 Tax=Tare... [more]
A0A6A4M4G5_9ERIC4.120e-631.58Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
A0A1W4V5P2_DROFC8.690e-636.04F-box/LRR-repeat protein 13 n=9 Tax=melanogaster g... [more]
K3X2Z6_GLOUD2.240e-533.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A218WGT7_PUNGR2.710e-525.48EIN3-binding F-box protein 1-like n=1 Tax=Punica g... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 363..383
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 154..252
coord: 2..149
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 154..252
coord: 2..149
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 6..249
IPR000048IQ motif, EF-hand binding siteSMARTSM00015iq_5coord: 345..367
e-value: 61.0
score: 7.2
coord: 375..397
e-value: 18.0
score: 11.7
coord: 288..310
e-value: 6.3
score: 15.4
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 290..317
score: 7.364
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 179..204
e-value: 0.64
score: 19.1
coord: 153..178
e-value: 0.052
score: 22.7
coord: 205..230
e-value: 200.0
score: 4.5
coord: 13..38
e-value: 2.3
score: 17.2
coord: 126..151
e-value: 0.67
score: 19.0
coord: 103..125
e-value: 2.7
score: 17.0
coord: 231..256
e-value: 180.0
score: 4.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..148
e-value: 2.5E-16
score: 61.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 149..260
e-value: 8.6E-21
score: 75.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46015contigH-elongata_contig46015:1052..4240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46015.11675.1mRNA_H-elongata_contig46015.11675.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46015 1052..4240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46015.11675.1 ID=prot_H-elongata_contig46015.11675.1|Name=mRNA_H-elongata_contig46015.11675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp
VGDATVRSIGRHCPNIKSLSMVELTRTTDRSLKELGRRCPLLKLLDSSSD
LNMLERSHRTRVPKLGTDGIREMCVGTRGLEVLRLNGACKITDDALKAVG
ANCSQLEELSCNLVTDVGIAAVARGSPFLRHLGAGGCVQLTDASVRVVAI
RAGRRLRVLDVTGCRKVTDHSLEAIGEHCGGLESLTIQGCESVSDQGLAG
MLKRCRNITALNLRGVPDLTEDAVGAVEIYCRRLRRLNIEGIPSVTGSRV
QLAGERLPFVARDPGKRELRLCNHPCRVFNAHVQERVEWTASAITVQRIV
RGQLCRLRWKRVQQRKACATKALRTGLSSIMATRLFRKQLEWRRTEHAAA
RVTQAGARDLLCRRAARAELNRLRNERHAVKNIQRVARGRRGRLEAKLRR
FVRNRAWTNWEWTFKRLCRKEHAIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf