prot_H-elongata_contig45647.11642.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig45647.11642.1
Unique Nameprot_H-elongata_contig45647.11642.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length326
Homology
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 1.240e-114
Identity = 200/329 (60.79%), Postives = 231/329 (70.21%), Query Frame = 0
Query:    1 LRGAKAEQCQVCMGSCVLFAGLRLQAAXXXXXXXXXXXXXXXXXXXDACSSTNTPSSKRAKGSKSDAGTGTAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDSKSAAAATPP---ETEGLVKEGRVDVSGLRDAVLAVAEAVPEKAWRPGQWRRVSYPAWRAFVLVATGPRELMQSMLMMEAGIKKEWLAKWWVKGWASPAVAMRIVTLQSVAFRAYALDSAILYEGSSRGGTNADAPAPPTGKKRGRPKSTPSAGPPKGARLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAGTPKQV 326
            +RGA  +QCQVC GSC+LFA  RL+AA                      + ++TP++KR+KG    + T  +                            XX K   +   A  P   E E  VKEG+VDVSGLR AVL +AEAVPEKAW+ GQWRRVSYPAWRAFVLVATGPRELMQ++LMMEAGI KEWLAKWW KGWASPAVAMR+VTLQSVA+RAYALD+A+LYEGSSRGGTNA+AP PP+GKKRGRPKS+PS+GPPKGARLFKG HE TCS+C EGG LICCDYCPAS+HM+PCL +      A+DP G WACPLCRAGTPK V
Sbjct: 2729 IRGAPVDQCQVCQGSCMLFASRRLKAASAAAGGLGATAEG---------AGSSTPAAKRSKGGSGASRTEVSS--------------------------KXXGKGGGNRGGAEEPVGREPEAQVKEGKVDVSGLRSAVLQLAEAVPEKAWKTGQWRRVSYPAWRAFVLVATGPRELMQALLMMEAGITKEWLAKWWNKGWASPAVAMRVVTLQSVAYRAYALDAAVLYEGSSRGGTNANAPPPPSGKKRGRPKSSPSSGPPKGARLFKGVHEATCSICGEGGALICCDYCPASFHMEPCLDL------AKDPAGPWACPLCRAGTPKPV 3016          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 8.200e-110
Identity = 195/328 (59.45%), Postives = 222/328 (67.68%), Query Frame = 0
Query:    1 LRGAKAEQCQVCMGSCVLFAGLRLQAAXXXXXXXXXXXXXXXXXXXDACSSTNTPSSKRAKGSKSDAGTGTAVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDSKSAAAATPP--ETEGLVKEGRVDVSGLRDAVLAVAEAVPEKAWRPGQWRRVSYPAWRAFVLVATGPRELMQSMLMMEAGIKKEWLAKWWVKGWASPAVAMRIVTLQSVAFRAYALDSAILYEGSSRGGTNADAPAPPTGKKRGRPKSTPSAGPPKGARLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAGTPKQV 326
            +RGA  +QCQVC GSC+LFA  RL+AA                      +  +TP++KR+KG    + T  +                               K      A  P   E E  VKEG+VDVSGLR AVL VAEAVPEKAW+ GQWRRVSYPAWRAFVLVATGPRELMQ++LMMEAGI KEWLAKW     ASPAVAMR+VTLQSVA+RAYALD+A+LYEGSSRGGTN +AP PP+GKKRGRPKS+PS+GPPKGARLFKG HE TCSMC EGG LICCDYCPAS+HM+PCL +      A+DP G WACPLCRAGTPK V
Sbjct: 2154 IRGAPVDQCQVCQGSCMLFASRRLKAASAASGGLGATAEG---------AGLSTPAAKRSKGGSGASRTEVSS--------------------------KKKGKGGNRGGAEEPVGLEPEAQVKEGKVDVSGLRSAVLQVAEAVPEKAWKTGQWRRVSYPAWRAFVLVATGPRELMQALLMMEAGITKEWLAKWXXXXXASPAVAMRVVTLQSVAYRAYALDAAVLYEGSSRGGTNPNAPPPPSGKKRGRPKSSPSSGPPKGARLFKGVHEATCSMCGEGGALICCDYCPASFHMEPCLEL------AKDPAGPWACPLCRAGTPKPV 2440          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: D8UEW1_VOLCA (PHD-type domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UEW1_VOLCA)

HSP 1 Score: 58.9 bits (141), Expect = 1.650e-7
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 0
Query:  257 PPKGARLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAG 321
            PP     F   +   C +C  GG+LICCD CPA+YH++ C+G T    A   P G W CP C  G
Sbjct:    4 PPAQTNAFDDGNTENCVLCGVGGSLICCDRCPAAYHLR-CIGQT----AHSIPDGDWLCPECAVG 63          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A6A3AMG6_HIBSY (Galactose oxidase/kelch repeat superfamily protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AMG6_HIBSY)

HSP 1 Score: 63.5 bits (153), Expect = 1.740e-7
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0
Query:  249 PKSTPSAGPPKGAR----LFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAG 321
            P++ P    PK  +    LF+  ++  CS C  GG LICCDYCP+++HM+ CLG+ +       P G W CP C  G
Sbjct:  248 PRTRPIVESPKTVKAADDLFRNENDEVCSACYNGGDLICCDYCPSTFHMK-CLGLKEV------PNGPWFCPSCCCG 317          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: I0YIG1_COCSC (PHD-type domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIG1_COCSC)

HSP 1 Score: 56.2 bits (134), Expect = 7.180e-7
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0
Query:  270 NTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAG 321
            + C +C +GG+L+CCD CPASYH++ C+G      A   P G W CP C  G
Sbjct:    5 DNCCLCNQGGSLLCCDGCPASYHLR-CIG----EQAKSLPEGEWLCPECALG 51          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A835YD59_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YD59_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 4.350e-6
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0
Query:  271 TCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAGT 322
            TC +C  GG+L+CCD CPA+YHM+ C+G + ARN    P+G W CP C AG+
Sbjct:  624 TCVLCGVGGSLLCCDMCPAAYHMK-CIGES-ARNL---PSGEWRCPECVAGS 670          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A154P0K3_DUFNO (PHD finger protein 12 n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P0K3_DUFNO)

HSP 1 Score: 59.3 bits (142), Expect = 4.410e-6
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 0
Query:  262 RLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAGTPKQV 326
            R  +G + +TC  C +GG LICCD CPASYH+Q       A + A  P G W C  CR  + K +
Sbjct:   49 RRGRGHNRDTCDACRDGGELICCDKCPASYHLQCHY---PAVDPADIPNGEWLCYACRCASKKNL 110          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A212F2A3_DANPL (PHD finger protein 12 isoform X1 n=4 Tax=Danaus TaxID=13036 RepID=A0A212F2A3_DANPL)

HSP 1 Score: 59.3 bits (142), Expect = 4.730e-6
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 0
Query:  262 RLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAGTPKQ 325
            R  KG + ++C  C EGG LICCD CPAS+H+  C       N    P G+W C  C+AG  KQ
Sbjct:   44 RPGKGHNHDSCDACREGGDLICCDRCPASFHLG-CYDPPLEENDI--PAGSWLCRECKAGDEKQ 104          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A6A2Y693_HIBSY (Galactose oxidase/kelch repeat superfamily protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y693_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 5.570e-6
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0
Query:  263 LFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAG 321
            LF+  H+   S C  GG LICCDYCP+++HM+ CLG+ +  N   DP   W CP C  G
Sbjct:  267 LFRDEHDEVFSACYNGGDLICCDYCPSTFHMK-CLGLKEVPN---DP---WFCPSCCCG 318          
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Match: A0A835M552_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M552_9MAGN)

HSP 1 Score: 58.9 bits (141), Expect = 7.010e-6
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 0
Query:  262 RLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMTKARNAARDPTGAWACPLCRAG 321
            R+     +  CS+C+ GG LI CDYCP+SYH+  C+ +    + A  P G W CP C+ G
Sbjct:  562 RMSSDQSDTICSVCQYGGKLIICDYCPSSYHLS-CVDLKVYPSVADVPDGKWFCPSCQCG 620          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig45647.11642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.240e-11460.79Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE8.200e-11059.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8UEW1_VOLCA1.650e-743.08PHD-type domain-containing protein n=1 Tax=Volvox ... [more]
A0A6A3AMG6_HIBSY1.740e-740.26Galactose oxidase/kelch repeat superfamily protein... [more]
I0YIG1_COCSC7.180e-746.15PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A835YD59_9CHLO4.350e-653.85Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A154P0K3_DUFNO4.410e-643.08PHD finger protein 12 n=1 Tax=Dufourea novaeanglia... [more]
A0A212F2A3_DANPL4.730e-645.31PHD finger protein 12 isoform X1 n=4 Tax=Danaus Ta... [more]
A0A6A2Y693_HIBSY5.570e-647.46Galactose oxidase/kelch repeat superfamily protein... [more]
A0A835M552_9MAGN7.010e-641.67Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 271..319
e-value: 3.6E-10
score: 49.8
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 272..319
e-value: 4.3E-7
score: 29.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 266..325
e-value: 1.9E-12
score: 48.5
NoneNo IPR availablePANTHERPTHR47162FAMILY NOT NAMEDcoord: 98..245
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..326
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 268..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig45647contigH-elongata_contig45647:1881..4396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig45647.11642.1mRNA_H-elongata_contig45647.11642.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig45647 1881..4396 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig45647.11642.1 ID=prot_H-elongata_contig45647.11642.1|Name=mRNA_H-elongata_contig45647.11642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=326bp
LRGAKAEQCQVCMGSCVLFAGLRLQAAAAASGGGSSSSSSLPPPSEDACS
STNTPSSKRAKGSKSDAGTGTAVGTSTSSKKKGKSGGARGGGSGGAGPGS
STRKDSKSAAAATPPETEGLVKEGRVDVSGLRDAVLAVAEAVPEKAWRPG
QWRRVSYPAWRAFVLVATGPRELMQSMLMMEAGIKKEWLAKWWVKGWASP
AVAMRIVTLQSVAFRAYALDSAILYEGSSRGGTNADAPAPPTGKKRGRPK
STPSAGPPKGARLFKGFHENTCSMCEEGGTLICCDYCPASYHMQPCLGMT
KARNAARDPTGAWACPLCRAGTPKQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD