prot_H-elongata_contig45496.11625.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig45496.11625.1
Unique Nameprot_H-elongata_contig45496.11625.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length204
Homology
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BLAST of mRNA_H-elongata_contig45496.11625.1 vs. uniprot
Match: D7FMR1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 3.710e-37
Identity = 89/169 (52.66%), Postives = 103/169 (60.95%), Query Frame = 0 
Query:    1 RASHDQDLSVRRASVDSLVQIGHRLLGVLDDQGIDHGKMATTAKRNSTNKRKGNGNIDDAAGKAAGGQEESEVARGVASRMRREIHSLRGKLLPIISRLTVDNEWQVRVEVACRMDFVCVALGEQCSAVTADIFPLLLKDADADVRCEAIRCLPRLARILLGFAMSGYA 169
            RAS D DLSVRRASVDSL+QIGHRL+GVL +         +                                         RE H+LR K++PI+ RL  DN+WQVRVE+ACR+D +CVALGEQ S VTA+I P L+ D D DVRCEAIRCLPRLARILLGFAMSGYA
Sbjct: 1095 RASLDIDLSVRRASVDSLLQIGHRLVGVLGES-----TPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGHALRCKVMPILVRLAGDNDWQVRVEIACRLDSLCVALGEQWSVVTAEILPALVADIDPDVRCEAIRCLPRLARILLGFAMSGYA 1258
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BLAST of mRNA_H-elongata_contig45496.11625.1 vs. uniprot
Match: A0A6H5KXG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.280e-36
Identity = 88/169 (52.07%), Postives = 103/169 (60.95%), Query Frame = 0 
Query:    1 RASHDQDLSVRRASVDSLVQIGHRLLGVLDDQGIDHGKMATTAKRNSTNKRKGNGNIDDAAGKAAGGQEESEVARGVASRMRREIHSLRGKLLPIISRLTVDNEWQVRVEVACRMDFVCVALGEQCSAVTADIFPLLLKDADADVRCEAIRCLPRLARILLGFAMSGYA 169
            RAS D DLSVRRASVDSL+QIGH L+GVL +         TT ++                                      E H+LR K++PI+ RL  DN+WQVRVE+ACR+D +CVALGEQ S VT +I P L+ D D DVRCEAIRCLPRLARILLGFAMSGYA
Sbjct:  104 RASLDIDLSVRRASVDSLLQIGHHLVGVLGE---------TTPRQXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXEGHALRCKVMPILVRLAGDNDWQVRVEIACRLDSLCVALGEQWSVVTTEILPALIADTDPDVRCEAIRCLPRLARILLGFAMSGYA 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig45496.11625.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMR1_ECTSI3.710e-3752.66PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KXG2_9PHAE2.280e-3652.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 68..166
e-value: 9.9E-9
score: 37.3
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 92..125
score: 8.859
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 3..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig45496contigH-elongata_contig45496:247..3860 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig45496.11625.1mRNA_H-elongata_contig45496.11625.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig45496 247..3860 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig45496.11625.1 ID=prot_H-elongata_contig45496.11625.1|Name=mRNA_H-elongata_contig45496.11625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
RASHDQDLSVRRASVDSLVQIGHRLLGVLDDQGIDHGKMATTAKRNSTNK
RKGNGNIDDAAGKAAGGQEESEVARGVASRMRREIHSLRGKLLPIISRLT
VDNEWQVRVEVACRMDFVCVALGEQCSAVTADIFPLLLKDADADVRCEAI
RCLPRLARILLGFAMSGYAIAAADDPSPSAETVPESSADQNTVGLASTLA
SDIP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR021133HEAT_type_2
IPR016024ARM-type_fold