prot_H-elongata_contig45456.11621.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig45456.11621.1
Unique Nameprot_H-elongata_contig45456.11621.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length182
Homology
[Close]
BLAST of mRNA_H-elongata_contig45456.11621.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.040e-54
Identity = 117/188 (62.23%), Postives = 133/188 (70.74%), Query Frame = 0 
Query:    1 SGERRVSLYDVLTGEATLPPLAE--RTTAASTDSAAASVEVGTADGIAAGASVDIVQPLGLIG----GRGTGRASIFDRIMDVVFNEENGEEDPVDTDAVRSAMKMLHDEFRVLFREGTMGMTLSMDPGTRNARVDKIVRQGQAFRAGVKSGDQVIGVGDHNVSSYGTVLAFMNIMGRPIELRFRKTD 182
            SGERR+SLYDVLTGEA LPP     R TA++  ++    EVG   G+ +G S          G    G G  RASIFDRI DVVFNEE  ++DPVD  AVRS    L DEFRV FREG MGMTLSMDP TR+A V KIV QGQAFRAG+++ D VIGVG++ VSSYGTVLAFMNIMGRPIEL FRK+D
Sbjct:   94 SGERRLSLYDVLTGEAPLPPTRGGLRDTASAEAASTTRREVGR--GLRSGGSXXXXXXXXXXGVVPLGGGARRASIFDRIADVVFNEEQKKQDPVDAIAVRSE---LEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELHFRKSD 276
[Close]
BLAST of mRNA_H-elongata_contig45456.11621.1 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.540e-11
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 0 
Query:   84 GEEDPVDTDAVRSAMKMLHDEFRVLFREGTMGMTLSMDPGTRNARVDKIVRQGQAFRAGVKSGDQVIGVGDHNVSS-----------------YGTVLAFMNIMGRPIELRFRKTD 182
            GE++ VD  A+R A+     EF V F EG++GM+L +      A V K+V +GQA   GVK+GD V  VGD   +S                 YGT LAF+NI+GRP+ L F+K +
Sbjct: 1206 GEDEIVDWSALRRALPK---EFSVEFNEGSIGMSL-VRTAADTAEVSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGE 1317
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig45456.11621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS10_ECTSI3.040e-5462.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTV8_9STRA7.540e-1140.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 81..182
e-value: 2.8E-6
score: 29.2
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 99..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig45456contigH-elongata_contig45456:2410..4131 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig45456.11621.1mRNA_H-elongata_contig45456.11621.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig45456 2410..4131 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig45456.11621.1 ID=prot_H-elongata_contig45456.11621.1|Name=mRNA_H-elongata_contig45456.11621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
SGERRVSLYDVLTGEATLPPLAERTTAASTDSAAASVEVGTADGIAAGAS
VDIVQPLGLIGGRGTGRASIFDRIMDVVFNEENGEEDPVDTDAVRSAMKM
LHDEFRVLFREGTMGMTLSMDPGTRNARVDKIVRQGQAFRAGVKSGDQVI
GVGDHNVSSYGTVLAFMNIMGRPIELRFRKTD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf