prot_H-elongata_contig20522.5852.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20522.5852.1
Unique Nameprot_H-elongata_contig20522.5852.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length796
Homology
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 444 bits (1143), Expect = 5.450e-132
Identity = 411/856 (48.01%), Postives = 488/856 (57.01%), Query Frame = 0
Query:    1 VFKRWRLAFLEGRQGSIKRESEENRGRAKSFEGLVQRLSEELERQGEVVNRHAEVIRHRGFELEAALDRASRAHDELIAMEPPSLAQAIGSMEILLR---------------------------------DVWCLVRYEKLSSKKRGVGSKGKEASPRPPEENEEAGRKADESTLEDSEHTEEEEVDIGGTEQTLIASMENVGERDQPAVVE----------VMSTVAKREGQGEQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTAGSWDSEGRLSTLLPPATAASVAGENTVVVIEWRTQEEVDEWFAIRLAAAMEQEDKLEEEQRRSGEKRDAEGEPV-----TTAVEAASLVAPR-LLPVLDTPATIQESFATEMARLEAKLNSKLEEARAELNRNTEAYKQYRARAHTAIKNSGASQREAEARITQMRKELATERELVRKALEERAAVEARWAEESADLKQRITELEALVESAAARCKELEAGIASSVEEGVKAARDETAAANGRLEEQKTATDEARGALARANTELDKARRELKQRGQLARNLLAEKDAEISRLRSGGRGRNGGGLIAGETASNVNNGNAFGFQQKAVEGKTPFVSVDGVSSSSSPLIIPPMGDSTRDNTGQGHTSPDPLADPFAVGYSSPNSVQGGTVKDRTPPVSFPDSFGADRKRFQSGGDVGGPQXXXXXXXXXXXXX--------------AEQQILQMARIQAQRDEEMGRLRVKLQRQSEEIRAREERLATRDQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGNERHRLVPVLATILSFSPAELNEVDRAVASATSGGGSSWGSVFG 793
            VF+RWRLAFLEGRQG++K ESEENRG+A+S+E LVQRLSEELERQGEVVNR+A ++  R  +L+AALDRA+RAHDELI+MEPPSL+QA+  ++ILLR                                  VWCLVRY   S                                              GGT +  ++S  N    DQP   E                 ++       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             TV V+EWRTQE+VDEWFA ++A A+E  D   E+          +G P      TT V A + VA   +LPVL+TP T+Q+SF  E++R+   L +KLEEARAEL RNTEAYKQYRARAHTAIKNSGASQR+ EARI Q  KELA E+E +R+A E+R A EARWAEESA LKQ+I ELEA V++AAAR  E+EA IA SVEEGV+AA++ETA A    EE   A  E R ALA A ++LDK +RELKQRGQLARNLLAEKDAEI+RLRSG     GGGL+           N  G    A  G      VDG + SS                                                                           XXXXXXXXXXXXX              AEQQILQMAR+QAQRDEE GRLRVK++R ++EIRAREE LA   +EKE L+++V +L+ EA R+KELLD   GPEKMTYLKNVVK+FV+S+G ER RLVPV+ATILSFSPAE +EV +AVA+A +GG +SWGSVFG
Sbjct: 2371 VFQRWRLAFLEGRQGTMKSESEENRGKAESYESLVQRLSEELERQGEVVNRYASLLLEREEQLDAALDRAARAHDELISMEPPSLSQAVDGVKILLRVSTTAAAGEQSAVTGDDAPAAAVAAGGEADAAPQVWCLVRYAIASXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXGGTPRGNVSSSGN----DQPVEGEEXXXXXXXXXXXXXXXXQKDAPATDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEVVEWRTQEDVDEWFAAQVARAIEVAD---EQXXXXXXXXXVDGGPAAGAMDTTVVNAQAPVAVAPVLPVLETPMTLQQSFGAELSRVRGDLEAKLEEARAELTRNTEAYKQYRARAHTAIKNSGASQRDTEARIAQAHKELAAEQEAMRRAHEDRTAAEARWAEESAVLKQQIAELEARVKTAAARTAEVEANIAGSVEEGVRAAKEETAEARRLEEEGAKAXGELREALAAARSDLDKTKRELKQRGQLARNLLAEKDAEINRLRSG---EAGGGLMHLHA-------NGDGGAVGAASGSA----VDGTALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQQILQMARVQAQRDEETGRLRVKIKRLADEIRAREEELAAXXEEKEGLRKRVEDLQGEAARAKELLDDATGPEKMTYLKNVVKRFVMSDGTERQRLVPVVATILSFSPAETSEVGKAVAAAAAGGATSWGSVFG 3199          
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 5.030e-114
Identity = 358/842 (42.52%), Postives = 442/842 (52.49%), Query Frame = 0
Query:    1 VFKRWRLAFLEGRQGSIKRESEENRGRAKSFEGLVQRLSEELERQGEVVNRHAEVIRHRGFELEAALDRASRAHDELIAMEPPSLAQAIGSMEILLRDVWCLVRYEKLSSKK-----------------------------------------RGVGSKGKEASPRPPEENEEAGRKADESTLEDSEHTEEEEVDIGGTEQTLIASMENVGERDQPAVVEVMSTVAKREG-QGEQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTAGSWDSEGRLSTLLPPATAASVAGENTVVVIEWRTQEEVDEWFAIRLAAAMEQEDKLEEEQRRSGEKRDAEGEPVTTAVEAASL-------VAPRLLPVLDTPATIQESFATEMARLEAKLNSKLEEARAELNRNTEAYKQYRARAHTAIKNSGASQREAEARITQMRKELATERELVRKALEERAAVEARWAEESADLKQRITELEALVESAAARCKELEAGIASSVEEGVKAARDETAAANGRLEEQKTATDEARGALARANTELDKARRELKQRGQLARNLLAEKDAEISRLRSGGRGRNGGGLIAGETASNVNNGNAFGFQQKAVEGKTPFVSVDGVSSSSSPLIIPPMGDSTRDNTGQGHTSPDPLADPFAVGYSSPNSVQGGTVKDRTPPVSFPDSFGADRKRFQSGGDVGGPQXXXXXXXXXXXXXAEQQILQMARIQAQRDEEMGRLRVKLQRQSEEIRAREERLATRDQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGNERHRLVPVLATILSFSPAELNEVDRAVASATSGGGSSWGSVFG 793
            VF+RWRLAFLEGRQG++K ESEENRG+A+S+E LVQRLSEELERQGE VNRHA ++  R  +L+AALDRA+RAHDELI+MEPPSL+Q           VWCLVRY   SS                                           RG  S  ++  P   EE E+    +  ++   S++      D   T+     S E+          ++ S    REG +G++                 XXXXXXXXXXXXXXXXXX +  G+ D +                  +TV V+EWRTQE+VDEWFA+++A A+E     EE+Q+ +      +G P   A++A ++       VAP +LPVL+TP T+Q+SF  E++R+   L  KLEEARAEL RNTEAYKQYRARAHTAIKNSGASQR+ EARI Q  KEL+ E+E +RKA E+R A EARWAEESA LKQ+I+ELEA VE+AAAR  E+EA IA SVEEGV+AA++ETA A  RLEE         GA                                                                                                                    A G                                              XXXXXXXXXAEQQILQMAR+QAQRDEE GRLRV +QR ++EIRAREE LA RD EKE L+++V +L+ EA R+KELLD   GPEKMTYLKNVVK+FV+S+G ER RLVPV+ATILSFSPAE +EV +AVA+A +GG +SWGSVFG
Sbjct: 2228 VFQRWRLAFLEGRQGAMKSESEENRGKAESYESLVQRLSEELERQGEAVNRHASLLLEREEQLDAALDRAARAHDELISMEPPSLSQ-----------VWCLVRYAIASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGDTPRGNVSSSRDDQPMEGEEGEQQPAASAPASXXQSQN------DAPATDDGAAVSAEDA---------QLSSNHPVREGAKGDES---------------GXXXXXXXXXXXXXXXXXXXVANGNNDKD------------------DTVEVVEWRTQEDVDEWFAVQVARAIEV---AEEQQQAASLGGGVDGGPSAGAMDATAVNAQAPVAVAP-VLPVLETPMTLQQSFGAELSRVRGDLEGKLEEARAELTRNTEAYKQYRARAHTAIKNSGASQRDTEARIAQAHKELSAEQEAMRKAHEDRTAAEARWAEESAALKQQISELEARVETAAARTAEVEANIAGSVEEGVRAAKEETAEAR-RLEEX--------GAK-------------------------------------------------------------------------------------------------------------------AXGXXXXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXAEQQILQMARVQAQRDEETGRLRVNIQRLADEIRAREEELAARDDEKEELRKRVEDLQGEAARAKELLDDATGPEKMTYLKNVVKRFVMSDGTERQRLVPVVATILSFSPAETSEVGKAVAAAAAGGATSWGSVFG 2857          
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Match: A0A835ZGA7_9STRA (GRIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.360e-10
Identity = 63/129 (48.84%), Postives = 77/129 (59.69%), Query Frame = 0
Query:  658 AEQQILQMARIQAQRDEEMGRLRV-------KLQRQSEEIRAREERLATRDQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGNERHRLVPVLATILSFSPAELNEVDRAVAS 779
            AEQQILQ AR QAQRDEE  RLR        +LQ + +EI ARE  L  R+ E       V +L+    R  +LL Q+   +K+TYLKNVV KF+V + + R RLVPVLATIL  S  E   V  +VAS
Sbjct: 2375 AEQQILQAARAQAQRDEEGNRLRGLVKELRDRLQTKDKEIAAREAALRIRESE-------VEDLKRSRAREGDLLGQDSA-DKLTYLKNVVLKFLVCDQHGRERLVPVLATILRLSELEAASVRASVAS 2495          
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Match: UPI001F5D44E6 (protein GRIP n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D44E6)

HSP 1 Score: 63.5 bits (153), Expect = 1.470e-6
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 0
Query:  658 AEQQILQMARIQAQRDEEMGRLR---VKLQRQSEEIRAREERLATRDQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGNERHRLVPVLATILSFSPAELNEVDRAV--------ASATSGGGSSWGSVFG 793
            AEQQIL +AR QAQR+EE+G+ +   + LQ++ EE+  RE RL   DQ++  LK ++  +  E ++ +E +D       MTYLKNV+ K +  E  E   L+PV+AT+L FSP ELN+    V        A+A S GGS+  S FG
Sbjct:  785 AEQQILLLARQQAQREEELGQSQRHILALQQEIEEL-ERENRL--HDQQQAMLKTELRNM--ERSQKREGID-------MTYLKNVILKLL--ETGEVGALLPVVATLLQFSPDELNKCQHGVLSTVASSPATALSDGGSTPNSFFG 917          
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Match: A0A0Q3GZM2_BRADI (GRIP domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3GZM2_BRADI)

HSP 1 Score: 60.5 bits (145), Expect = 1.110e-5
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 0
Query:  658 AEQQILQMARIQAQRDEEMGRLR---VKLQRQSEEIRAREERLATRDQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGNERHRLVPVLATILSFSPAELNEVDRAV--------ASATSGGGSSWGSVFG 793
            AEQQIL +AR QAQR+EE+G+ +   + LQ++ EE+  RE RL   DQ++  LK ++  +  E ++ +E +D       MTYLKNV+ K +  E  E   L+PV+AT+L FSP ELN+    V        A+A   GGS+  S FG
Sbjct:  507 AEQQILLLARQQAQREEELGQSQRHILALQQEIEEL-ERENRL--HDQQEAILKTELRNM--ERSQKREGID-------MTYLKNVILKLL--ETGEVGALLPVVATLLQFSPDELNKCQNGVLSNVASSPATALLDGGSTPNSFFG 639          
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Match: I1GUL1_BRADI (GRIP domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GUL1_BRADI)

HSP 1 Score: 60.5 bits (145), Expect = 1.270e-5
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 0
Query:  658 AEQQILQMARIQAQRDEEMGRLR---VKLQRQSEEIRAREERLATRDQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGNERHRLVPVLATILSFSPAELNEVDRAV--------ASATSGGGSSWGSVFG 793
            AEQQIL +AR QAQR+EE+G+ +   + LQ++ EE+  RE RL   DQ++  LK ++  +  E ++ +E +D       MTYLKNV+ K +  E  E   L+PV+AT+L FSP ELN+    V        A+A   GGS+  S FG
Sbjct:  718 AEQQILLLARQQAQREEELGQSQRHILALQQEIEEL-ERENRL--HDQQEAILKTELRNM--ERSQKREGID-------MTYLKNVILKLL--ETGEVGALLPVVATLLQFSPDELNKCQNGVLSNVASSPATALLDGGSTPNSFFG 850          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20522.5852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE5.450e-13248.01GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEJ5_ECTSI5.030e-11442.52GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZGA7_9STRA1.360e-1048.84GRIP domain-containing protein n=1 Tax=Tribonema m... [more]
UPI001F5D44E61.470e-642.18protein GRIP n=1 Tax=Lolium rigidum TaxID=89674 Re... [more]
A0A0Q3GZM2_BRADI1.110e-541.50GRIP domain-containing protein n=1 Tax=Brachypodiu... [more]
I1GUL1_BRADI1.270e-541.50GRIP domain-containing protein n=2 Tax=Brachypodiu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 331..369
NoneNo IPR availableCOILSCoilCoilcoord: 381..447
NoneNo IPR availableCOILSCoilCoilcoord: 676..724
NoneNo IPR availableCOILSCoilCoilcoord: 470..511
NoneNo IPR availablePANTHERPTHR23160MYOSIN HEAVY CHAIN-RELATEDcoord: 644..782
NoneNo IPR availablePANTHERPTHR23160:SF10PROTEIN GRIPcoord: 644..782
IPR000237GRIP domainSMARTSM007551gripcoord: 730..776
e-value: 3.1E-8
score: 43.4
IPR000237GRIP domainPFAMPF01465GRIPcoord: 733..771
e-value: 3.6E-11
score: 42.8
IPR000237GRIP domainPROSITEPS50913GRIPcoord: 727..776
score: 11.492

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20522contigH-elongata_contig20522:3084..6877 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20522.5852.1mRNA_H-elongata_contig20522.5852.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20522 3084..6877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20522.5852.1 ID=prot_H-elongata_contig20522.5852.1|Name=mRNA_H-elongata_contig20522.5852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=796bp
VFKRWRLAFLEGRQGSIKRESEENRGRAKSFEGLVQRLSEELERQGEVVN
RHAEVIRHRGFELEAALDRASRAHDELIAMEPPSLAQAIGSMEILLRDVW
CLVRYEKLSSKKRGVGSKGKEASPRPPEENEEAGRKADESTLEDSEHTEE
EEVDIGGTEQTLIASMENVGERDQPAVVEVMSTVAKREGQGEQGEREGEA
EAARVPLPMSPPSSAENESGSDAAAAAVTLTAGSWDSEGRLSTLLPPATA
ASVAGENTVVVIEWRTQEEVDEWFAIRLAAAMEQEDKLEEEQRRSGEKRD
AEGEPVTTAVEAASLVAPRLLPVLDTPATIQESFATEMARLEAKLNSKLE
EARAELNRNTEAYKQYRARAHTAIKNSGASQREAEARITQMRKELATERE
LVRKALEERAAVEARWAEESADLKQRITELEALVESAAARCKELEAGIAS
SVEEGVKAARDETAAANGRLEEQKTATDEARGALARANTELDKARRELKQ
RGQLARNLLAEKDAEISRLRSGGRGRNGGGLIAGETASNVNNGNAFGFQQ
KAVEGKTPFVSVDGVSSSSSPLIIPPMGDSTRDNTGQGHTSPDPLADPFA
VGYSSPNSVQGGTVKDRTPPVSFPDSFGADRKRFQSGGDVGGPQQQQQQQ
TAADSHHAEQQILQMARIQAQRDEEMGRLRVKLQRQSEEIRAREERLATR
DQEKERLKEQVGELEAEATRSKELLDQEHGPEKMTYLKNVVKKFVVSEGN
ERHRLVPVLATILSFSPAELNEVDRAVASATSGGGSSWGSVFGSM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP_dom