prot_H-elongata_contig19887.5579.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19887.5579.1
Unique Nameprot_H-elongata_contig19887.5579.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length631
Homology
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BLAST of mRNA_H-elongata_contig19887.5579.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.770e-13
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 0 
Query:   19 CVEALLVAINNVCHGQLQQEWYVSTKNLQLVCVELCAACRELETSHIIVTSDTPPHLW---RRRYDKNHESKSVL--SRLPALRVSGITWKRSIAWLFEISPKHTATRLRDHSVQERRGEEDQEWRPASLMTLKQGVHRGLKHIDWPEKLHRLTLMSD 171
            C++A +VA+N  C GQ ++ WYVST  LQLV +E+C ACR ++T H+ V   TPP LW   +     N+ S  V   SR+P ++  G+TW   +  L     + +AT +R  S   R          +S  +L+  V        WP++L R+   SD
Sbjct:    9 CLDAFVVALNQACDGQ-EKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVL----QQRSATEVRSGSGCRRANTH------SSAASLESAV--------WPQRLKRMVFESD 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19887.5579.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNI6_9PHAE6.770e-1334.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 84..343
e-value: 2.3E-6
score: 28.2
IPR008615FNIPPFAMPF05725FNIPcoord: 564..606
e-value: 1.8E-9
score: 37.6
coord: 238..281
e-value: 1.2E-8
score: 35.0
coord: 367..408
e-value: 4.4E-16
score: 58.8
coord: 498..541
e-value: 1.1E-6
score: 28.7
coord: 411..448
e-value: 2.3E-4
score: 21.2
NoneNo IPR availablePANTHERPTHR32134:SF132coord: 334..522
coord: 139..305
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 334..522
coord: 139..305
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 445..626
coord: 272..473
NoneNo IPR availablePANTHERPTHR32134:SF132coord: 445..626
coord: 272..473
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 158..475

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19887contigH-elongata_contig19887:1863..5323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19887.5579.1mRNA_H-elongata_contig19887.5579.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19887 694..5412 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19887.5579.1 ID=prot_H-elongata_contig19887.5579.1|Name=mRNA_H-elongata_contig19887.5579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=631bp
MDVVTSRATGWRSSAPILCVEALLVAINNVCHGQLQQEWYVSTKNLQLVC
VELCAACRELETSHIIVTSDTPPHLWRRRYDKNHESKSVLSRLPALRVSG
ITWKRSIAWLFEISPKHTATRLRDHSVQERRGEEDQEWRPASLMTLKQGV
HRGLKHIDWPEKLHRLTLMSDFNEAIENVIWPASLKQLTLGPHFNHLIDG
VEWPPLLQQLNFGDAFNRPIAHVLWPLYLRQVTFGKKFNQAIESVIWPNS
LTHLSFGHNFNQAVARVVWPVSLQNLKFGYCFYQQIRDIVWPVSLQLLKL
NFEGPIDTAMWPTLLQETTVDPCTRTALKIVLRDSLRVLRFARDFNQPVC
MVVWPSSLEQLTFGRVFNQPLDDVVLPSSLKELTFGRNFNQPIDDVMLPS
SLKELTFGWDFNQPIKNVLWPLLLEQLTFGRSFNQPMDGVMWPKRLKTFK
VGLCFNQSIDNTIWPVSLRLISFGNGCCPMNVFSPVGESCNVAFMWTFNT
PLDKALLPAWSTQLTFGHSFNQLLDTVVWPNSLRELTLGNDFNQPIEKVA
WPAALQCLAFGLKFNQAIEKVVWPTTLEHLIFGDSFNQPIDKVVWPNRLR
CISFGTSYDQRNGLYTTWPDSLQTITSRLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP