prot_H-elongata_contig19831.5554.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19831.5554.1
Unique Nameprot_H-elongata_contig19831.5554.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length692
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19831.5554.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainSMARTSM00297bromo_6coord: 455..575
e-value: 4.7E-4
score: 24.4
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 469..545
e-value: 5.8E-11
score: 42.3
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 474..549
score: 8.952
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 461..576
e-value: 1.1E-14
score: 56.2
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 467..575
NoneNo IPR availablePANTHERPTHR22881:SF11SWI/SNF NUCLEOSOME REMODELING COMPLEX COMPONENTcoord: 275..541
NoneNo IPR availablePANTHERPTHR22881BROMODOMAIN CONTAINING PROTEINcoord: 275..541

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19831contigH-elongata_contig19831:1941..5908 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19831.5554.1mRNA_H-elongata_contig19831.5554.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19831 1245..7006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19831.5554.1 ID=prot_H-elongata_contig19831.5554.1|Name=mRNA_H-elongata_contig19831.5554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=692bp
MSAVKSSEELSLDTSASTKFHASPQEAITENSTEGESKTPRSPSTGTKWQ
EVSFREDSSNLAHSDGESDTDCLEEGARTETDNPGTKWQGVSFRGDSSNL
SHSDSESDTDCLEEGARTETDNPEPTQHHQKPDTGDGLCPTEDSETEDDC
ADEYGTEDQPLASLPDRPNTQNHDAESVRSGNFKQHHRPTLNLVSTSPVL
EAATSASGVDSTKLEASALGADFIKVEASCSKETIIEESAPDEKCDIAPE
GLIIPDSRSETNRGEGTCASHNRSERCDRRSVSATGSTSFEPSKNALCGA
ASARRICQSSDGAGGEYQLAYTASSARACPRRDNHRHFFHSTKDEIETGD
MADDRSRAHTSSRQEKSDEEAALDSKIKMEDPPHINPERYTHVTYCCWCD
NQRLQTQAVALCESCPRTMCLRCAHRGSLTIPSESSLKDIVLPSSFCRCC
RWDSQFPTPRRDIQPETHLLKQLSNHDLALQFREPVDIEANPNYLSAITH
SKMMDLATMAQKMKKCHYRTTRGQRLFQRDLQQIWINCWKYAEYDPKSCA
PVPGIVACSLILVKMVNKFCELYMRIPTLMFDDKCWLAVNERVKHGRFSQ
MVQSQAKQESRKVTHLRRSVKGNAAENNTQALEEECQWEDHADKTWIRPS
NLNSALGKKRKYCNDMPGMEGSEKLCQLAEIGDKLAQLRRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf