prot_H-elongata_contig19436.5399.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19436.5399.1
Unique Nameprot_H-elongata_contig19436.5399.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length292
Homology
BLAST of mRNA_H-elongata_contig19436.5399.1 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 2.280e-60
Identity = 152/350 (43.43%), Postives = 183/350 (52.29%), Query Frame = 0
Query:    1 MESSADRAFRSSSQTLSPTTTAAYPAGNDGDAGVQGGREERTSPPPVSIGQALSSARRKAGPLMARKATTFLDSPSRDLSDRSGWGESSKGSTASGGAIRRPS----------------------------LGWGSKSSLAVKEGMVLRVLSEHHLSQQMAVLLPTSLTFSRPRSQRGLRLLPQDILRVEVGGCEGEEDGDPLL------QYIPGMFPVEIHTLGRVHYMLVEGLSEARSWAAVIEHHFGDERR------ASPLDEVIITDPPEQYMIKRLSWKTKNVWVLNARR------------------AGLSATPPEGDWGDGCWLDRGGPGGEICEFLPGLLRQ 292
            MESSADRA+RS +   + T TA  PA +  D G         SPP   IG   ++A   +G     K+     SP    S    W    KG  AS      P                               W ++SSLA+KEGMVLRVLSEHHLSQQ+AVLLP+SLTFSRPR Q  LRLL +DI+ VE+GG  G  DG          Q IPGM  VEIHT+GRVHYMLVEGL EAR WA  I+   G ++       ASP D++ I+DP  QYM K+ SWK  N WVLN RR                   G SA   +  WG GCW+D+GG GG++C+F+ GLLRQ
Sbjct: 1145 MESSADRAYRSYNPVAAATATA--PAASSADGGA-------ASPPGFPIGVGDANAMGTSG-----KSEERARSPDASAS----WAVGGKGQPASPPLYSPPQSSVKXXXXXXXXXXXXXXXXXXXXXXXXXSWTTRSSLAIKEGMVLRVLSEHHLSQQVAVLLPSSLTFSRPRKQC-LRLLTRDIMAVELGG--GPVDGSGSTPPPHSSQLIPGMHLVEIHTIGRVHYMLVEGLQEARDWAVDIQSQLGQQQADGGRASASPQDDLSISDPFSQYMTKKSSWKATNFWVLNCRRLLELNGAAFGGXXXXXXXVGRSA---DVGWGGGCWMDQGGVGGQVCDFVSGLLRQ 1470          
BLAST of mRNA_H-elongata_contig19436.5399.1 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.910e-56
Identity = 117/215 (54.42%), Postives = 138/215 (64.19%), Query Frame = 0
Query:  104 LGWGSKSSLAVKEGMVLRVLSEHHLSQQMAVLLPTSLTFSRPRSQRGLRLLPQDILRVEVGGCEGEEDGDPLL------QYIPGMFPVEIHTLGRVHYMLVEGLSEARSWAAVIEHHF------GDERRASPLDEVIITDPPEQYMIKRLSWKTKNVWVLNARRA--------------GLSATPPEGDWGDGCWLDRGGPGGEICEFLPGLLRQ 292
            LG   +SSLA+KEGMVLRVLSEHHLSQQ+AVLLP+SLTFSRPR Q  LRLL +DI+ VE+GG  G  DG          Q IPGM+ VEIHT+GRVHYMLVEGL EAR WA  I+         G    ASP D++ I+DP  QYM K+ SWK  N WVLN RR               G+      G WG GCW+D+GG GG++C+F+ GLL Q
Sbjct: 1167 LGPPGESSLAIKEGMVLRVLSEHHLSQQVAVLLPSSLTFSRPRKQC-LRLLTRDIMAVELGG--GPVDGSGSTPPPHSSQLIPGMYLVEIHTIGRVHYMLVEGLQEARDWAVDIQSQLHQQQADGGRTSASPQDDLSISDPFSQYMTKKSSWKATNFWVLNCRRLLELNGAASGGGGCRGVGRAADVG-WGGGCWMDQGGVGGQVCDFVSGLLSQ 1377          
BLAST of mRNA_H-elongata_contig19436.5399.1 vs. uniprot
Match: A0A836CH08_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH08_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.420e-9
Identity = 55/198 (27.78%), Postives = 87/198 (43.94%), Query Frame = 0
Query:  100 RRPSLGWGSKSSLAVK------EGMVLRVLSEHHLSQQMAVLLPTSLTFSRPRSQRGLRLLPQDILRVEVGGCEGEEDGDPLLQYIPGMFPVEIHTLGRVHYMLVEGLSEARSWAAVIEH----------------HFGDERRASPLD-------------EVIITDPPEQYMIKRLSWKTKNVWVLNARRAGLSATP 262
            RRPS+  G++++  +       EGMV+R LSE+H S++ AV+   S+  SR   ++ LR+   D++ V V     +        ++PG   V++HTLGRVH +L+ GL     W A +                    G E     LD              V    P   ++  + +W+    ++LN RR  LSA P
Sbjct:  936 RRPSMLSGARAAALLTAPPPQVEGMVIRALSEYHWSEEWAVVTDKSVLLSR-HGRQTLRIDKWDLMDVTVANAASDARSGV---FLPGFVTVKVHTLGRVHALLLRGLERVAPWVAALNALRTSASLESARFLRATSAGSEMSDLTLDGIGGGGGAEDEDTSVQAASPYGSFLQHKSTWRGSGRYILNCRR--LSAAP 1127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19436.5399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMK0_ECTSI2.280e-6043.43DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KCR6_9PHAE5.910e-5654.42DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CH08_9STRA3.420e-927.78DUF547 domain-containing protein n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19436contigH-elongata_contig19436:1224..5632 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19436.5399.1mRNA_H-elongata_contig19436.5399.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19436 1197..5632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19436.5399.1 ID=prot_H-elongata_contig19436.5399.1|Name=mRNA_H-elongata_contig19436.5399.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MESSADRAFRSSSQTLSPTTTAAYPAGNDGDAGVQGGREERTSPPPVSIG
QALSSARRKAGPLMARKATTFLDSPSRDLSDRSGWGESSKGSTASGGAIR
RPSLGWGSKSSLAVKEGMVLRVLSEHHLSQQMAVLLPTSLTFSRPRSQRG
LRLLPQDILRVEVGGCEGEEDGDPLLQYIPGMFPVEIHTLGRVHYMLVEG
LSEARSWAAVIEHHFGDERRASPLDEVIITDPPEQYMIKRLSWKTKNVWV
LNARRAGLSATPPEGDWGDGCWLDRGGPGGEICEFLPGLLRQ
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