prot_H-elongata_contig188136.5145.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig188136.5145.1
Unique Nameprot_H-elongata_contig188136.5145.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length41
Homology
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BLAST of mRNA_H-elongata_contig188136.5145.1 vs. uniprot
Match: D7G175_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G175_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.140e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:    1 IPSTISKLVTLKELNLAYNVGIVGELPREIGSMSRLTVLHL 41
            IPSTIS LVTL ELN++YN G+VG LPRE+GSM+ LTVLH+
Sbjct:   30 IPSTISNLVTLNELNMSYNFGVVGFLPREVGSMANLTVLHI 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188136.5145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G175_ECTSI5.140e-1273.17Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..41
e-value: 1.6E-7
score: 32.6
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188136contigH-elongata_contig188136:737..859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188136.5145.1mRNA_H-elongata_contig188136.5145.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig188136 737..859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig188136.5145.1 ID=prot_H-elongata_contig188136.5145.1|Name=mRNA_H-elongata_contig188136.5145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
IPSTISKLVTLKELNLAYNVGIVGELPREIGSMSRLTVLHL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf