prot_H-elongata_contig17642.4615.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17642.4615.1
Unique Nameprot_H-elongata_contig17642.4615.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length185
Homology
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 5.450e-71
Identity = 151/184 (82.07%), Postives = 164/184 (89.13%), Query Frame = 0
Query:    1 MDGQELGGRWLNIIMSFERPGANARTGGSKPKPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSPRPKQGIQSFKGTKKSFD 184
            +DGQELGGRWL I+MSFE+P  +AR G  K KP GCTTVFIGNLSWSIDE+TIRQTFGECGDIK+VRFAEDRETGEFRGFGHVE+YDG  VDAA++LA S+VMGRPIRVDYAAPRAPR+ SFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      F+ R KQGIQSF+GTKKSFD
Sbjct:  341 LDGQELGGRWLKIMMSFEKPD-HARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------FNARAKQGIQSFQGTKKSFD 517          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.580e-47
Identity = 78/121 (64.46%), Postives = 95/121 (78.51%), Query Frame = 0
Query:    9 RWLNIIMSFER---PGANARTGGSKPKPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGGG 126
            RWL I+++ ER   P   A     K KPEGCTTVFIGNLSW +DE+ +R  FGECG+I +VRFA DRETG+F+GFGHVE+ DG  VDAA+++AG+ + GRP+RVDYAAPRAPRE SFGGGG
Sbjct:  159 RWLKIVLATERAARPSFGAPD--KKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 158 bits (399), Expect = 9.250e-43
Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 0
Query:    1 MDGQELGGRWLNIIMSFERPGANARTGGSKP--KPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGGG 126
            +DG  +G RW+ +I++ + P         KP  KPEGC TVFIGNLSW IDE+T+RQTFG+CGDIK+VRFAEDRETG FRGFG+V++YDG   D A++L GS++MGR +R+DY+APR      FGGGG
Sbjct:  370 LDGGTVGERWVKLILARDIPPP------PKPGEKPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG-----FGGGG 486          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A7S1DDH5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDH5_CYCTE)

HSP 1 Score: 143 bits (360), Expect = 5.480e-40
Identity = 65/124 (52.42%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    1 MDGQELGGRWLNIIMSFERPGANARTGGSKPKPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGG 124
            ++G++  GRWLNI  S  +P    R      K +GC TVF+GNLSW+IDE+T+++ FGECG+IK VRFA D+ET +F+G+GH+E+Y+    D A+ELAG+++MGRP+RVDYA  R     SFGG
Sbjct:   56 LNGEDFQGRWLNIKYSTPKPIMAPRE--PTQKQDGCVTVFVGNLSWNIDEDTLKEVFGECGEIKMVRFATDKETEDFKGYGHIEFYETEATDKAMELAGTDIMGRPVRVDYANDRRK---SFGG 174          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: W7TQX9_9STRA (RNA binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.000e-39
Identity = 75/126 (59.52%), Postives = 93/126 (73.81%), Query Frame = 0
Query:    8 GRWLNIIMSFERPGANARTGG-----SKP---KPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGG 125
            GRW+ +   +E P A  + GG     ++P   KPEGC +VFIGNLSW+IDEETIR  F  CG++ +VRFA DRETGEFRGFGHV++ D +  +AAV++AG+ VMGR IRVDYA PR PREG FGGG
Sbjct:  342 GRWVRV-RKYE-PTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGG 465          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 148 bits (374), Expect = 6.750e-39
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = 0
Query:    1 MDGQELGGRWLNIIMSFERPGANARTGGSKP--KPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGGGR 127
            +DG   G RWL I  + ERP A      +KP  +PEGC TVF GNLSW IDEE++R+ F +CGDI +VRFAEDRETG+FRGFG+V +YDG+C D A++L G  V GR IR+DY+APR       GGGGR
Sbjct:  390 LDGATFGERWLKIEEARERPAA------AKPGERPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPRDRS----GGGGR 508          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A7S0GF91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GF91_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.620e-39
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 0
Query:   32 KPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGGG 126
            K EGCTTVF+GNLSW IDEET+RQTFGECG I +VRFA DRETGEFRG+GHVE+ +    D AV +AG +VMGR IRVD+AA R   + SFGGGG
Sbjct:    3 KQEGCTTVFVGNLSWDIDEETLRQTFGECGTICSVRFATDRETGEFRGYGHVEFEETEATDKAVGMAGQDVMGRAIRVDFAAVR---QNSFGGGG 94          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.740e-38
Identity = 60/115 (52.17%), Postives = 88/115 (76.52%), Query Frame = 0
Query:    1 MDGQELGGRWLNIIMSFERPGANARTGGSKPKPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPR 115
            ++G++ GGRWL+I  + ++P   AR   +  KP  C TVF GNLSW++DE+T+R+TF ECG+I ++RFA DRETGEF+GFGH+E++     DAA+ +AG+++MGR +RVDYAA +
Sbjct:  265 LNGEDFGGRWLSIKYASDKPAFAARE--TSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.220e-37
Identity = 63/115 (54.78%), Postives = 85/115 (73.91%), Query Frame = 0
Query:    1 MDGQELGGRWLNIIMSFERPGANARTGGSKPKPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPR 115
            M+G + GGRWL+I ++ ++P    R      KPEGC T+FIGNLSW IDE+++R+ F ECG+I TVRFAED+ETG+FRGFGHVE+ +      AV +AG+++MGR +RVDYA  R
Sbjct:  263 MNGGDFGGRWLDIKLADDKPIQTERA--PSEKPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375          
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Match: K0RJJ6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RJJ6_THAOC)

HSP 1 Score: 145 bits (366), Expect = 5.580e-37
Identity = 69/126 (54.76%), Postives = 88/126 (69.84%), Query Frame = 0
Query:    2 DGQELGGRWLNIIMSFERPGANARTGGSKPKPEGCTTVFIGNLSWSIDEETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGSNVMGRPIRVDYAAPRAPREGSFGGGGR 127
            +G + GGRWLNI  S  RP   AR      K EGC TVF+GN+S+ IDE+T+R+TF +CG+I ++RFAED+ETG F+G+GHVE+ +    D AV LAG+ VM RPIRVD+A  R  R  S GG GR
Sbjct:  664 NGADFGGRWLNIKYSTSRPITEARA--PSQKEEGCVTVFVGNMSFHIDEDTVRETFKDCGEIASIRFAEDKETGVFKGYGHVEFVESKATDRAVALAGTYVMNRPIRVDFANERKGRSSSGGGXGR 787          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17642.4615.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF99_ECTSI5.450e-7182.07Protein for assembly of pre-ribosomal particles co... [more]
A0A835ZAT4_9STRA1.580e-4764.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V571_9STRA9.250e-4358.59Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1DDH5_CYCTE5.480e-4052.42Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
W7TQX9_9STRA1.000e-3959.52RNA binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3UY59_HETAK6.750e-3957.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0GF91_9STRA7.620e-3969.47Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3Q248_9STRA2.740e-3852.17Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2RIH6_9STRA3.220e-3754.78Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0RJJ6_THAOC5.580e-3754.76Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 38..110
e-value: 4.9E-22
score: 89.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 39..108
e-value: 3.0E-16
score: 59.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..114
score: 17.012
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 22..132
e-value: 6.7E-28
score: 99.3
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 30..165
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 31..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17642contigH-elongata_contig17642:4023..4907 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17642.4615.1mRNA_H-elongata_contig17642.4615.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17642 1622..6090 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17642.4615.1 ID=prot_H-elongata_contig17642.4615.1|Name=mRNA_H-elongata_contig17642.4615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MDGQELGGRWLNIIMSFERPGANARTGGSKPKPEGCTTVFIGNLSWSIDE
ETIRQTFGECGDIKTVRFAEDRETGEFRGFGHVEYYDGSCVDAAVELAGS
NVMGRPIRVDYAAPRAPREGSFGGGGRGGGGFGGGGRGGGGGFGGRGGGR
GGGRGGGRGGGRGGFSPRPKQGIQSFKGTKKSFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf