prot_H-elongata_contig175043.4557.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig175043.4557.1
Unique Nameprot_H-elongata_contig175043.4557.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length97
Homology
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: D7FVX7_ECTSI (Proliferating cell nuclear antigen n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX7_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.080e-46
Identity = 78/96 (81.25%), Postives = 85/96 (88.54%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            QDRISDF+LKLMDIDSEHLGIPKTEYNC+I MPSAEFARIM+DL VIGDTCTIAC K+GV FSVSGD+G GNIM++   SV KEE KVTV MEEPV
Sbjct:  108 QDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPV 203          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: B8BWU2_THAPS (Proliferating cell nuclear antigen n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU2_THAPS)

HSP 1 Score: 143 bits (360), Expect = 1.690e-40
Identity = 66/96 (68.75%), Postives = 83/96 (86.46%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            QDRI+DF+LKLMDID+E LGIP TEY C I MPSAEF RI++DL V+GDTCTI+CTKEGVKFSVSGDLG GN++++Q ++  K+E KV ++M+EPV
Sbjct:  108 QDRIADFELKLMDIDNEQLGIPDTEYKCTIQMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDEEKVMIEMDEPV 203          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: A0A812RGX4_SYMMI (Proliferating cell nuclear antigen n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RGX4_SYMMI)

HSP 1 Score: 142 bits (358), Expect = 3.290e-40
Identity = 66/96 (68.75%), Postives = 81/96 (84.38%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            QDRISDF +KLM+I+SEHLGIP TEY+C + +PS+EF RIM+DL+V+GDTCTIACTKEGV+FS SGDLG GNI+LK   SV K+E  V + M+EPV
Sbjct:  109 QDRISDFDMKLMEIESEHLGIPDTEYSCTVRLPSSEFQRIMRDLTVLGDTCTIACTKEGVRFSASGDLGTGNILLKHNASVDKDEDAVVIDMQEPV 204          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: Q6Y858_SKECO (Proliferating cell nuclear antigen (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q6Y858_SKECO)

HSP 1 Score: 135 bits (341), Expect = 2.760e-38
Identity = 62/95 (65.26%), Postives = 81/95 (85.26%), Query Frame = 0
Query:    3 DRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            DRI+DF+LKLMDIDSE LGIP+T+Y C I MPS EF RI++D+ V+GDT TI+CTKEGV+FSVSGDLG GN++++Q +S  KEE +V ++M+EPV
Sbjct:   55 DRIADFELKLMDIDSEQLGIPETDYKCTIQMPSGEFQRIIRDMQVLGDTATISCTKEGVRFSVSGDLGTGNVLVRQNSSHEKEEERVMIEMQEPV 149          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: A0A7S2NW67_9STRA (Proliferating cell nuclear antigen n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NW67_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.100e-38
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            QDRI+DF+LKLMDID++HLGIP TEY C I MPS+EF RI++D+ V+GDTCTI+C KEGV+FSVSGDLG GN++++  +S   E   VT+ MEEPV
Sbjct:  108 QDRIADFELKLMDIDADHLGIPDTEYTCNIKMPSSEFQRIIRDMQVLGDTCTISCNKEGVRFSVSGDLGTGNVLVRANSSAENESDNVTIDMEEPV 203          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: A0A7S1VR92_9STRA (Proliferating cell nuclear antigen n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VR92_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.250e-37
Identity = 59/97 (60.82%), Postives = 80/97 (82.47%), Query Frame = 0
Query:    1 EQDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            +QDRI+DF+LKLMDID+E LGIP T Y C + MP+AEF RI++DL V+GDTCT++CTKEG++FSVSGDLG GN++++Q  +  KE  +V + M+EPV
Sbjct:   70 DQDRIADFELKLMDIDNEQLGIPDTPYKCQVQMPAAEFQRIIRDLQVLGDTCTLSCTKEGLRFSVSGDLGTGNVLVRQNGTAEKESERVLIDMDEPV 166          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: A0A7R9WGG0_9STRA (Proliferating cell nuclear antigen n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WGG0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.880e-37
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            QDRI+DF+LKLMDIDSE LGIP TEY C I MPS EF RI++D+ V+GDTC I+CTKEGV+FSVSGDLG GN++++   +  KEE +V + MEEPV
Sbjct:  157 QDRIADFELKLMDIDSEQLGIPDTEYKCTIKMPSTEFQRIVRDMQVLGDTCVISCTKEGVRFSVSGDLGTGNVLIRNNANAEKEEDQVLIDMEEPV 252          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: A0A8J2SZG7_9STRA (Proliferating cell nuclear antigen n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZG7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.050e-36
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            Q+R+S+F+LKLMDID+E LGIP  +YN  + M SAEF RI++D++V+GDTC+I CTKEGVKFSVSGDLG GNI L+Q NSV KEE  VT++M+EPV
Sbjct:  184 QERVSEFELKLMDIDAESLGIPDQDYNTNVKMSSAEFQRIVRDMTVLGDTCSIGCTKEGVKFSVSGDLGQGNITLRQTNSVDKEEEAVTIEMDEPV 279          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: W7TJJ6_9STRA (Proliferating cell nuclear antigen n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJJ6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.310e-36
Identity = 64/97 (65.98%), Postives = 81/97 (83.51%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSV-GKEEVKVTVQMEEPV 97
            Q+RISDF+LKLMDI++EHLGIP  EY C I+MPS EF RI++DL+VIG+TC I CTKEGVKFSVSGDLG GN+ ++Q ++  G E+ +V +QMEEPV
Sbjct:  108 QERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPV 204          
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Match: A0A7S2EL74_TRICV (Proliferating cell nuclear antigen n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL74_TRICV)

HSP 1 Score: 134 bits (337), Expect = 1.760e-36
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 0
Query:    2 QDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGDTCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV 97
            QDRI+DF+LKLMDIDSE LGIP T Y C + MPSAEF RI++DL  +GDTC I+C KEGV+FSVSGDLG GN++++   S  K+E KV + MEEPV
Sbjct:  164 QDRIADFELKLMDIDSEQLGIPDTSYKCTVQMPSAEFQRIIRDLGSLGDTCNISCNKEGVRFSVSGDLGTGNVLVRSNASADKDEEKVLIDMEEPV 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175043.4557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX7_ECTSI1.080e-4681.25Proliferating cell nuclear antigen n=2 Tax=Ectocar... [more]
B8BWU2_THAPS1.690e-4068.75Proliferating cell nuclear antigen n=1 Tax=Thalass... [more]
A0A812RGX4_SYMMI3.290e-4068.75Proliferating cell nuclear antigen n=1 Tax=Symbiod... [more]
Q6Y858_SKECO2.760e-3865.26Proliferating cell nuclear antigen (Fragment) n=1 ... [more]
A0A7S2NW67_9STRA4.100e-3864.58Proliferating cell nuclear antigen n=1 Tax=Leptocy... [more]
A0A7S1VR92_9STRA1.250e-3760.82Proliferating cell nuclear antigen n=1 Tax=Grammat... [more]
A0A7R9WGG0_9STRA1.880e-3765.63Proliferating cell nuclear antigen n=2 Tax=Odontel... [more]
A0A8J2SZG7_9STRA1.050e-3666.67Proliferating cell nuclear antigen n=1 Tax=Pelagom... [more]
W7TJJ6_9STRA1.310e-3665.98Proliferating cell nuclear antigen n=2 Tax=Monodop... [more]
A0A7S2EL74_TRICV1.760e-3664.58Proliferating cell nuclear antigen n=1 Tax=Trieres... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 1..97
e-value: 1.3E-31
score: 111.9
NoneNo IPR availablePANTHERPTHR11352PROLIFERATING CELL NUCLEAR ANTIGENcoord: 1..97
NoneNo IPR availablePANTHERPTHR11352:SF8coord: 1..97
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 21..97
IPR000730Proliferating cell nuclear antigen, PCNATIGRFAMTIGR00590TIGR00590coord: 2..97
e-value: 1.2E-36
score: 124.5
IPR022649Proliferating cell nuclear antigen, PCNA, C-terminalPFAMPF02747PCNA_Ccoord: 21..97
e-value: 1.2E-27
score: 96.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175043contigH-elongata_contig175043:2..863 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175043.4557.1mRNA_H-elongata_contig175043.4557.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig175043 2..863 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig175043.4557.1 ID=prot_H-elongata_contig175043.4557.1|Name=mRNA_H-elongata_contig175043.4557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
EQDRISDFQLKLMDIDSEHLGIPKTEYNCMITMPSAEFARIMKDLSVIGD
TCTIACTKEGVKFSVSGDLGVGNIMLKQKNSVGKEEVKVTVQMEEPV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000730Pr_cel_nuc_antig
IPR022649Pr_cel_nuc_antig_C