prot_H-elongata_contig17234.4456.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig17234.4456.1
Unique Name	prot_H-elongata_contig17234.4456.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	667

Homology

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BLAST of mRNA_H-elongata_contig17234.4456.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 5.620e-49
Identity = 196/514 (38.13%), Postives = 235/514 (45.72%), Query Frame = 0

Query:  216 GEGKANALAVIRAFFAKHPPAVYGRDEGWISTKEEAREARERTARKSYEARESPREAHESQVASGGV--KRDRAAGGKVEDQPRGKKQKKSKSALRDXXXXXXXXXXXXHQLKNPPPQPVGKQRRREVDKAKGSGKSDDGGAVGDSKVDTATSRTGA-------GKRENQIHTALKLTQKLGKASVEDKFSKDDVLEVLRRLGELEESVELLQQSGCGKAVANTRKYFFGGQVKHNDKDVSTAASALRSRWAATLG------KGTPAHGSALASVDGKRTNAGESSRSHHGGPKVEVSAAGAETARASAGERRGVKHVEKNGGRKGKKAKGSGEHEEGKSG--------------------------------------------MKSEVVVDVPFPSSVPGDALTEAVK-----EASRSAALDEPRRRALGMLTSVLGSAAPAMKRCTAIEEELFSSQGQEVGKEYLRCLRTAVFSMEGSGAQRLRDKVMSEMVLPRDFTSKSSDELRALAGM 665
            G  KA ALA +R F A  PP  YGRDEGWI +KEEA  ARE +AR    A ES                KRDRA                       XXXXXXXXXXXX Q+K+   +P+ KQ RR                             GA       G RE++I    KLTQ+L KA VE KF+K++VLE+L++LGELE S ELLQQSGCGKAVA+ RKYF GGQVKHNDK+V+TAAS+LR+RW   L                                             G ET R+                 +  K +  G   EG                                               +K E   +V                     + S + A DEPRRRA+GML SVLG+ A A++RCT IEEEL  SQG E+ KEYLR LRTAVFSMEGS +Q+LRDKVMS  V+  DF SKS +ELRA+AG+
Sbjct:  523 GRAKARALAFVREFVAGLPPTEYGRDEGWIPSKEEA--AREASAR----AGESXXXXXXXXXXXXXXXNKRDRAGXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXTQMKSSS-EPIWKQHRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPGAGAGGNRESEIQMGRKLTQRLAKAGVEGKFNKEEVLEILQKLGELEPSRELLQQSGCGKAVASARKYFSGGQVKHNDKEVATAASSLRTRWMNALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGEETPRS-----------------RSPKPETGGVAREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKETTKEVXXXXXXXXXXXXXXXXXXXSAKMSTAVAKDEPRRRAMGMLMSVLGTTAAALERCTEIEEELHQSQGGEISKEYLRRLRTAVFSMEGSDSQKLRDKVMSGYVVSSDFVSKSCEELRAMAGL 1007

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig17234.4456.1 vs. uniprot

BLAST of mRNA_H-elongata_contig17234.4456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KKU8_9PHAE	5.620e-49	38.13	TFIIS N-terminal domain-containing protein n=2 Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 404..459 e-value: 1.5E-5 score: 24.9
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 375..464 score: 10.449
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10		coord: 370..471 e-value: 3.0E-9 score: 38.4
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 385..469
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 574..659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig17234	contig	H-elongata_contig17234:1057..5896 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig17234.4456.1	mRNA_H-elongata_contig17234.4456.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig17234 135..6899 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig17234.4456.1 ID=prot_H-elongata_contig17234.4456.1|Name=mRNA_H-elongata_contig17234.4456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=667bp
MHEMGRSSAPPKTSKSKKPSTSQPAAAGTVISTDSTRGRGRGRPRKYPIK
ELEADRPSSSSSGAEYELELPKEAEDAAMEGVDEAVEAVGVRGGGQGEEE
EEEDEVMGVDGDEEEYTAEPEHDDEVGDDDKIFEESYASSKKSSRKRGRT
RKSGGRGRDDGDGGGSASGGGGGRRQSSKRPRLASASFSSRAGDRSPVDS
GSAPTTRKKVRQRATGEGKANALAVIRAFFAKHPPAVYGRDEGWISTKEE
AREARERTARKSYEARESPREAHESQVASGGVKRDRAAGGKVEDQPRGKK
QKKSKSALRDEKQKQQASKKRQHQLKNPPPQPVGKQRRREVDKAKGSGKS
DDGGAVGDSKVDTATSRTGAGKRENQIHTALKLTQKLGKASVEDKFSKDD
VLEVLRRLGELEESVELLQQSGCGKAVANTRKYFFGGQVKHNDKDVSTAA
SALRSRWAATLGKGTPAHGSALASVDGKRTNAGESSRSHHGGPKVEVSAA
GAETARASAGERRGVKHVEKNGGRKGKKAKGSGEHEEGKSGMKSEVVVDV
PFPSSVPGDALTEAVKEASRSAALDEPRRRALGMLTSVLGSAAPAMKRCT
AIEEELFSSQGQEVGKEYLRCLRTAVFSMEGSGAQRLRDKVMSEMVLPRD
FTSKSSDELRALAGMV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017923	TFIIS_N
IPR035441	TFIIS/LEDGF_dom_sf
IPR036575	TFIIS_cen_dom_sf