prot_H-elongata_contig16961.4321.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16961.4321.1
Unique Nameprot_H-elongata_contig16961.4321.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length672
Homology
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BLAST of mRNA_H-elongata_contig16961.4321.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.790e-7
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 0 
Query:  157 QSVPIYYAALAIKKSKA-MSKKDRNRNVVEMYKTFAVSAFLDWLQKEHGYETPYWLTKGLMG---MSTFQDQ-----------------------EEKLYDPREKTLWKTYLRIRRDIRKTVTPWLNKWLAKSGDEEE-TMPSGQQYDDLMQELMNSLW 287
            Q+V + Y A+ +K++   +  K R   +++ YK   V  FL WL +E    TP WLT  +MG   + T + Q                       E KLY   +K +W  YL   RDIRK   P  +K +   GD+   T PSG+QY D + EL+ +LW
Sbjct:   40 QTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMEMMGRVAVHTCRHQWHRNAGAEEQGERETAATESLYEEPKLYKDGKK-IWARYLDAFRDIRKDANPVYDKTI---GDQPGGTPPSGEQYADQLDELLQALW 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16961.4321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JM89_9PHAE1.790e-732.70Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16961contigH-elongata_contig16961:2836..7347 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16961.4321.1mRNA_H-elongata_contig16961.4321.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16961 2790..7443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16961.4321.1 ID=prot_H-elongata_contig16961.4321.1|Name=mRNA_H-elongata_contig16961.4321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=672bp
MPVRGRDPPNAWKQRCAGGMCFIGDSLGNEGSSAVYCSAHKDAEMVNVTH
RRCEEPGCPHQPSFNMEGGKAVYCRSHKKVGMINVSSPRCHSPGPDHLVR
DIHLQEWCSGSRAKTMNENQHCAEIMFLGRNERTVSWVLNRLKKDTSKKA
VTLAIFQSVPIYYAALAIKKSKAMSKKDRNRNVVEMYKTFAVSAFLDWLQ
KEHGYETPYWLTKGLMGMSTFQDQEEKLYDPREKTLWKTYLRIRRDIRKT
VTPWLNKWLAKSGDEEETMPSGQQYDDLMQELMNSLWGTTQAGASKRMSW
LDYEKKISHGEKLEIVSDLLETGNSDGPGDDSGAVGGGREGANGAAQRRG
MANGDTGGNGASQSEEGSKPLEYGVDTMLNVRMAMPDTWVHKDSLVVCLF
SKISDSPDEDLNFTPSSGHQNKKRRSTGDSSGNENDEDSSSSYFGSDRLS
RKVMKMLGKENESGSYGRSDPRKKDKARERRIEDSSLKDGKHLLEKPPQD
EETRQATAAVKNIARAVTKSIELQELSVKRSNKTQVQYHQLKLNEARGNA
RNQEIKWQRDKIELLKKVGSSDQVKRAELELVSLYEKPLDDFLTSGRSGG
PGKGGGKCGSSAGGNDSSSGCGDIGVGSFGDCQGGASGTSVSATKALSAL
ADVGEALTQGVGETPGANTTQ*
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