prot_H-elongata_contig16304.4001.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16304.4001.1
Unique Nameprot_H-elongata_contig16304.4001.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length311
Homology
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BLAST of mRNA_H-elongata_contig16304.4001.1 vs. uniprot
Match: D8LM09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM09_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 1.540e-128
Identity = 213/313 (68.05%), Postives = 242/313 (77.32%), Query Frame = 0 
Query:    1 MRSWVVVVFFLTNLVESFHVNTFNRQIIFRRTRLAAHPSARA--ISMGTSSLPTLESLRKTGLMTIAALVIGSSPL-----HAFAASIPAVAEELTAENPATVQELSPAEMLVKKTTEIQRKRLKEEEQQQLQGDVDMAEGDLIARVRVSIKADLYELGAPDVSGFPGLDTDDARLIVAAFGKDGPPVAAKRLTIKGRPFPVIVELTVNDLAFPLTKDAWKQDGRSLEDIGLAVEIDPDGKAATLDSGSLTGYGVSKPLRIGAQMERTEATIELIPNPQLQERAEQTLPPEGLEQLERVDAMLDYKEEQASKG 306
            MRS+ V  FFL ++VESFHV+T  R   F  +R ++   A    + MG  SLP+ ESLRKT   T AAL+I  SP      HAFAA            + A  QELSPAEMLVKKTT++QRKRLK+E Q+QLQGDV M EGDLIARV VSIK DLY+LGAPD +GFP +DTDDARLIVAAFGKDGPPVAAKRL +KGR FPV VELT +DLAFPLTKDAW+ D RS EDIGLAVEIDPDG+AATLDS SLTGYGVSKPLRIGAQ+ERTEA +EL+ NPQL+ERAEQ LP EG++QLERVDAMLDYKE +A KG
Sbjct:    1 MRSYAVAAFFLASVVESFHVSTVGRPHEFHSSRSSSRAGASVSPLLMGAPSLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAA------------DRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQDLYDLGAPDTTGFPAVDTDDARLIVAAFGKDGPPVAAKRLAVKGRQFPVTVELTADDLAFPLTKDAWRLDSRSKEDIGLAVEIDPDGRAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVANPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKG 301
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BLAST of mRNA_H-elongata_contig16304.4001.1 vs. uniprot
Match: A0A836CAJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ8_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.350e-64
Identity = 121/266 (45.49%), Postives = 173/266 (65.04%), Query Frame = 0 
Query:   58 KTGLMTIAALVIGSSPLHAF--------------AASIPAVAEELTAENPATVQELSPAEMLVKKTTEIQRKRLKEEEQQQLQGDVDMAEGDLIARVRVSIKADLYELGAPDVSGFPGLDTDDARLIVAAFGKDGPPVAAKRLTIKGRPFPVIVELTVNDLAFPLTKDAWKQDGRSLEDIGLAVEIDPDGKAATLDSGSLTGYGVSKPLRIGAQMERTEATIELIPNPQLQERAEQTLPPEGLEQLERVDAMLDYKEEQASKGIAA 309
            K     IAALV+ +SP+ A               +  I  V E+  A+    V++++P + L ++ T  Q  R++ E+Q+ L+ D     G+LIARV VSIK+D + LG PDV  FP LDT+DARLIV AFG+ GPPVA++R+ +KG  FP ++ELT +DLAFPLTK+ W  D R+ ++IG+AV +D DGK ATLD+G LTGYG+SKP+++G Q++RTEA + +  N  L+E+ +  LP   +  LER+DA+LD KE  A+   AA
Sbjct:   43 KAACSAIAALVVAASPVLAIGDVPPVLQEGGSSESGGIAIVQEQQLAQQQQPVEDINPVQQLAQQATAEQVTRVRAEQQEVLRRDALREPGELIARVVVSIKSDAFPLGFPDVGPFPELDTEDARLIVTAFGRSGPPVASRRVPLKGLKFPALLELTADDLAFPLTKEVWLNDARAQDEIGVAVVLDVDGKLATLDAGDLTGYGISKPIKLGGQVQRTEAIVTVQVNKALEEKGQAALPSMEIAVLERIDALLDLKESIAATAAAA 308
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BLAST of mRNA_H-elongata_contig16304.4001.1 vs. uniprot
Match: A0A4D9DAT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAT9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.030e-22
Identity = 48/127 (37.80%), Postives = 80/127 (62.99%), Query Frame = 0 
Query:  154 PDVSGFP-----------GLDTDDARLIVAAFGKDGPPVAAKRLTIKGRPFPVIVELTVNDLAFPLTKDAWKQDGRSLEDIGLAVEIDPDGKAATLDSGSLTGYGVSKPLRIGAQMERTEATIELIP 269
            P++ G+P            L+ D+A L++  +G++G PVAAK++ ++G  FP   ELT N+L FPLTK+ W++D R+ +D+G++  +D DGK +T +   L G+G+SKP+ I     R +A I++ P
Sbjct:  157 PEIEGYPLGPERPGVINYALENDNAALLITCYGREGGPVAAKKIQLRGLQFPYNFELTFNNLLFPLTKETWEKDNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALIQVTP 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16304.4001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM09_ECTSI1.540e-12868.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAJ8_9STRA2.350e-6445.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DAT9_9STRA1.030e-2237.80Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..310
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.753

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16304contigH-elongata_contig16304:154..4662 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16304.4001.1mRNA_H-elongata_contig16304.4001.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16304 127..5304 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16304.4001.1 ID=prot_H-elongata_contig16304.4001.1|Name=mRNA_H-elongata_contig16304.4001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=311bp
MRSWVVVVFFLTNLVESFHVNTFNRQIIFRRTRLAAHPSARAISMGTSSL
PTLESLRKTGLMTIAALVIGSSPLHAFAASIPAVAEELTAENPATVQELS
PAEMLVKKTTEIQRKRLKEEEQQQLQGDVDMAEGDLIARVRVSIKADLYE
LGAPDVSGFPGLDTDDARLIVAAFGKDGPPVAAKRLTIKGRPFPVIVELT
VNDLAFPLTKDAWKQDGRSLEDIGLAVEIDPDGKAATLDSGSLTGYGVSK
PLRIGAQMERTEATIELIPNPQLQERAEQTLPPEGLEQLERVDAMLDYKE
EQASKGIAAA*
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