prot_H-elongata_contig15657.3688.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15657.3688.1
Unique Nameprot_H-elongata_contig15657.3688.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1067
Homology
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BLAST of mRNA_H-elongata_contig15657.3688.1 vs. uniprot
Match: D7FSE7_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.820e-20
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 0 
Query:   99 KTTGLPPPLCADCGQTERSWSLVLICDGCNATFHLGCQGRSNQPDGEWFCPNCTTILLDSDSEDEGA 165
            KTT LPPP+C  C QTERSW  VL+CDGC ATFHLGC   S+QP GEW+CP CT+ LLDSDSE + A
Sbjct:  101 KTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCARMSSQPFGEWYCPRCTSFLLDSDSEADDA 167
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BLAST of mRNA_H-elongata_contig15657.3688.1 vs. uniprot
Match: A0A6H5L3S5_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.820e-20
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 0 
Query:   99 KTTGLPPPLCADCGQTERSWSLVLICDGCNATFHLGCQGRSNQPDGEWFCPNCTTILLDSDSEDEGA 165
            KTT LPPP+C  C QTERSW  VL+CDGC ATFHLGC   S+QP GEW+CP CT+ LLDSDSE + A
Sbjct:  332 KTTALPPPICGRCKQTERSWPSVLVCDGCEATFHLGCAHMSSQPCGEWYCPRCTSFLLDSDSEADDA 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15657.3688.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSE7_ECTSI2.820e-2068.66PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L3S5_9PHAE2.820e-2068.66PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 107..152
e-value: 3.9E-7
score: 39.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 69..154
e-value: 3.0E-11
score: 45.2
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 108..151
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 105..154
score: 9.517
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 102..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15657contigH-elongata_contig15657:2196..6679 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15657.3688.1mRNA_H-elongata_contig15657.3688.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15657 689..6763 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15657.3688.1 ID=prot_H-elongata_contig15657.3688.1|Name=mRNA_H-elongata_contig15657.3688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1067bp
MREYNRAKRRGEEVVRLPEPPRVVVSYRPPGVLASSSSAGSTAAGTAVAT
AAGAATAGRTATAARAATVARAATAARAATTLTAMTSSSSRGPSTTSLKT
TGLPPPLCADCGQTERSWSLVLICDGCNATFHLGCQGRSNQPDGEWFCPN
CTTILLDSDSEDEGAEPEDNGPCRLPSPSALSSASPRKNAVGHHPTDVAS
SKACTRSTNFAPRGGYAANPEPGGPAVTFDDKMDGSLDKSAVGSARDGPN
SDTALGVSGAGAATDVAVAAVTLGMSDAVGSEAVGWQTLRPISASGSTPE
SDVLPSAATIRIGINTYDGRTAGAGVGAKGTEHLKGDVRGCRCPDCVSIL
LQSGGTRPPRAAKVIVPGDAVTNSTPISVPSTATTCPVKRGSGAPIVSAP
VAGAKRQRQRSPRPSPAAQAVSAGPRKTGAGERSTTPAPSPNAPSAITAP
SSANAPSAANAPSATNAPSAPSTHPAAKAQSTVNAPSPANMQSTANAPST
VNAPSPAAATSLEARVGLRPRQDKRKRHREDEESEWGLFSSEDDQEGADG
RRERGTGKGKGKGKGAAACSDDGSYSMSSDGASSSGDELKDGVRRRKRRT
GRTNKNGTNSVGRGSTGDMWRKGLGAKANTTDASPGGVRRRVASRTTRKG
VVTACEHTDRPLYSKGSCKPCYMVNYWDRRHAAQGKKPRSPRSGAGGQKK
DREVQDQGMSPESASSSNTAFGDSSTLEAKLPSAAASADPVNRTSTHADG
ARPEAHHGGGLETGMVADADAESGDGEMVDVEIESPGSSLAPVVESEASR
GNPPSSGESGAAWSKSDSEEGTRDGKVTPRFQAKNLCAGGGRKGVGKLSA
ISKAAGMHPGGPAAAVESTMLAKSKEIVRPVTVTMAKSKQDGVGQDVEAA
SATARSSAGKISTPKTIVISVIGPTPVKPLTKKSSTGTTPRLPKGSTSRE
GKGAGDAQAATTKKRPRLPAEGGHRATTMSSSSPAPPNNAASGTTVYTRN
VSIATGKGESSTKFNKAYGTGAGAGRERSAEKLPTGAKRVKITMGSASPR
EQASSYAEGAGARTGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD