prot_H-elongata_contig155515.3638.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig155515.3638.1
Unique Name	prot_H-elongata_contig155515.3638.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	124

Homology

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 2.290e-67
Identity = 108/123 (87.80%), Postives = 116/123 (94.31%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKKVVKK 123
            M+GKGKGGRG KK+T+RS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAV+EYLTAEVLE AGNAARDNKKARI+PRHIQLAVR DEELNKLLGEVT ASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 7.750e-66
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KK+T+RS+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAV+EYLTAEVLE AGNAARDNKKARI+PRHIQLAVR DEELNKLLGEVT ASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.920e-64
Identity = 105/119 (88.24%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+TS+SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAV+EYLTAEVLE AGNAARDNKKARI+PRHIQLAVR DEELNKLLGEVT ASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.320e-63
Identity = 100/121 (82.64%), Postives = 112/121 (92.56%), Query Frame = 0

Query:    3 GKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKKVVKK 123
            GKGKGGRGDKKA S+S+KAGLQFPVGR+GRFLK G+Y++RVGAGAPVY+AAVMEYL AEVLE +GNAARDNKK+RI+PRHIQLAVR DEELNKLLG+VT A+GGVLPNIHAVLLPKK   K
Sbjct:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.920e-63
Identity = 103/119 (86.55%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK TSRS+KAGLQFPVGRIGRF+K GKYS RVG GAPVY+AAV+EYLTAEVLE AGNAARDNKKARIVPRHIQLAVR DEELN+LLG+ T ASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.990e-63
Identity = 105/119 (88.24%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK+TS+SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAV+EYLTAEVLE AGNAARDNKKARI+PRHIQLAVR DEELNKLLGEVT ASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 194 bits (492), Expect = 8.850e-62
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 0

Query:    1 MTGKGKGGRGD--KKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKK 119
            M GKGKGGRG   KK+TS+SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAV+EYL AE+LE AGNAARDNKK+RIVPRHIQLAVR DEELNKLLG VT ASGGVLPNIHAVLLPKK
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.870e-61
Identity = 98/122 (80.33%), Postives = 110/122 (90.16%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KK+T+ S+KAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAV+EYL AE+LE AGNAARDNKK+RIVPRHI LAV+ DEELNKLLG VT ASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 192 bits (487), Expect = 4.080e-61
Identity = 96/119 (80.67%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG+KK+T+ S+KAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAV+EYL AE+LE AGNAARDNKK+RIVPRHI LAV+ DEELNKLLG VT ASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119

[Close]

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC)

HSP 1 Score: 191 bits (484), Expect = 1.960e-60
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0

Query:    3 GKGKGGRGDKK-ATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVYLAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEVTTASGGVLPNIHAVLLPKKVVK 122
            GKGKGGRGDKK  TS SSKAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAV+EYL AE+LE AGNAARDNKK+RIVPRHI LAV+ DEELNKLLG VT A+GGVLPNIHA+LLPKK +K
Sbjct:   10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKKTIK 130

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot

BLAST of mRNA_H-elongata_contig155515.3638.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	2.290e-67	87.80	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	7.750e-66	87.70	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	3.920e-64	88.24	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
A0A835ZLE9_9STRA	1.320e-63	82.64	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
D8LLP0_ECTSI	1.920e-63	86.55	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
D7FVQ5_ECTSI	1.990e-63	88.24	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A836CG77_9STRA	8.850e-62	83.47	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A6U2JFS4_9STRA	2.870e-61	80.33	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A448ZH28_9STRA	4.080e-61	80.67	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
B7FZS7_PHATC	1.960e-60	80.99	Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 42..57 score: 85.3 coord: 57..70 score: 83.47 coord: 99..117 score: 71.18 coord: 13..35 score: 72.8 coord: 71..85 score: 74.98
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..122 e-value: 6.0E-74 score: 261.7
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 9..90 e-value: 1.4E-15 score: 57.8
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..123 e-value: 8.2E-59 score: 198.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..122
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 91..123 e-value: 3.1E-16 score: 58.8
None	No IPR available	PANTHER	PTHR23430:SF233	HISTONE H2A.6-RELATED	coord: 2..121
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..121
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 21..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig155515	contig	H-elongata_contig155515:561..932 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig155515.3638.1	mRNA_H-elongata_contig155515.3638.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig155515 561..932 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig155515.3638.1 ID=prot_H-elongata_contig155515.3638.1|Name=mRNA_H-elongata_contig155515.3638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MTGKGKGGRGDKKATSRSSKAGLQFPVGRIGRFLKTGKYSQRVGAGAPVY
LAAVMEYLTAEVLEFAGNAARDNKKARIVPRHIQLAVRKDEELNKLLGEV
TTASGGVLPNIHAVLLPKKVVKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR032454	Histone_H2A_C
IPR032458	Histone_H2A_CS