prot_H-elongata_contig15422.3573.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15422.3573.1
Unique Nameprot_H-elongata_contig15422.3573.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length169
Homology
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: D7FVR7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR7_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 5.610e-87
Identity = 143/166 (86.14%), Postives = 149/166 (89.76%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQFETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E+VLIDCSGPPGEPRNEETG+ RKRDALLSQLERR  LRTLVFCNTIQGCRQ    VEN+LSRASR GQFETLVYHSAIDPK+AA NM+QFMRSNAL PMVMVCTDRSSRGMDFDRA+       VEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV
Sbjct:  438 EEVLIDCSGPPGEPRNEETGLARKRDALLSQLERRMALRTLVFCNTIQGCRQ----VENMLSRASRGGQFETLVYHSAIDPKQAASNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAE-------VEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 592          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A836CPS5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS5_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.280e-66
Identity = 114/168 (67.86%), Postives = 130/168 (77.38%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRK-VLRTLVFCNTIQGCRQASASVENILSRASRKG-QFETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E+VL+DCSGPP E +NE TG  RKR+AL++QL RR   LRTLVFCNTI+ CR+    VEN L R  R+  +F  L YHSAIDP  A  N+R+F RSNAL PM++VCTDRSSRGMDFD A        V+HV+LYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV
Sbjct:  213 EEVLVDCSGPPEEAKNEATGAARKREALMTQLTRRSGALRTLVFCNTIRSCRE----VENTLRRTDRRSARFSVLAYHSAIDPAAATANLREFSRSNALQPMILVCTDRSSRGMDFDSAS-------VDHVVLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 369          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A7S4DKM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKM7_HETAK)

HSP 1 Score: 181 bits (459), Expect = 3.250e-51
Identity = 95/169 (56.21%), Postives = 123/169 (72.78%), Query Frame = 0
Query:    2 NSEKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQFETLV-YHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            N E+V+IDCSGP GE + EETG   KR AL   +   +  RTLVFCNTI+ CR+    VEN L R  ++G    L+ YH+AI+P+K  E++R FMRSN+L PMV++CTDR+SRGMDF++A+       V+HV+L+DFPRD  EY+RRVGRTARAGRKG VT L +GRQ+
Sbjct:  337 NLEQVIIDCSGPEGEKKTEETGFAHKRAALAQLMLTVRAHRTLVFCNTIENCRK----VENALRRLDKRGDKHILLPYHNAIEPQKRGEHLRTFMRSNSLNPMVLICTDRASRGMDFEQAE-------VDHVVLFDFPRDAAEYVRRVGRTARAGRKGRVTALVFGRQL 494          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A7S2V2H4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2H4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.670e-51
Identity = 93/169 (55.03%), Postives = 122/169 (72.19%), Query Frame = 0
Query:    2 NSEKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQFE-TLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            N ++V++DCSGP GE   E++G R KR+AL   L      RTLVFCNTI+ CR+    VEN + R ++KGQ    L +H+AIDP++  +++R FMR N+L+PM+++CTDR+SRGMDFD A        VEHV+L+DFPRDP EYMRRVGRTARAGR G VT L +GRQ+
Sbjct:  372 NLDQVIVDCSGPWGEKHTEDSGFRHKREALTELLATVPAQRTLVFCNTIENCRK----VENAVQRWNKKGQKALVLAHHNAIDPERRGKHLRSFMRPNSLLPMILICTDRASRGMDFDTAD-------VEHVILFDFPRDPSEYMRRVGRTARAGRTGRVTSLVFGRQL 529          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A0G4ET85_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ET85_VITBC)

HSP 1 Score: 165 bits (417), Expect = 5.410e-46
Identity = 91/167 (54.49%), Postives = 114/167 (68.26%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASR-KGQFETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E+VL+DCSGP  E +NE T   RKR AL  QL++  V RTL+FCN+I+ CR+    VEN L R  R + +F+ L YHS ID ++  E    F R N LIPMV+V TD++SRG+DFD+ +       V HV+L+DFPRDP EY+RRVGRTARAGR G VT L  GRQV
Sbjct:  267 EEVLVDCSGPKDEAKNEFTAFERKRKALAGQLDKVVVPRTLIFCNSIENCRR----VENALRRLDRGRKRFQVLPYHSGIDNERRREIFNAFTRENFLIPMVLVSTDQASRGVDFDQVE-------VGHVILFDFPRDPSEYVRRVGRTARAGRAGRVTSLVLGRQV 422          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: I2CPE5_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPE5_NANGC)

HSP 1 Score: 144 bits (362), Expect = 8.590e-39
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQ-FETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E+VL+DCSGP  E RNEETG  RKRD L+  L +    R+LVFCN+I  CR+    VEN L RA R+ + ++ L YHSA++P+   +N+  F  S    P++MVCTDR+SRG+DFD A        V+HV+L+DFPRDP EY+RRVG          VT L  GRQV
Sbjct:  164 EEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRK----VENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFS-SRVERPLIMVCTDRTSRGVDFDTAD-------VQHVVLFDFPRDPSEYVRRVGXXXXXXXXXXVTALVLGRQV 318          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A7R9YGA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGA2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.380e-38
Identity = 82/178 (46.07%), Postives = 116/178 (65.17%), Query Frame = 0
Query:    5 KVLIDCS----GPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKG-QFETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARA--------EPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            KVL+DCS    G   +    ET +++K D L+S LE R + RT+VFCN++ GCR+    VEN L+R  R+  +++ L YHSA+    A  ++  F   N+L+P+V+VCTDR+SRGMDF  +  RA        E + V+HV+L+DFPRD  E++RRVGRT    RKG+VT+LA G+QV
Sbjct:  244 KVLLDCSLDGRGRASDKGTVETALQKKLDTLVSVLEARPLRRTIVFCNSVDGCRR----VENALNREDRREMKWKALPYHSAVSSDAAQRSLSTFSALNSLVPLVLVCTDRASRGMDFGFSAGRATGRPSDSIETAGVDHVILFDFPRDVAEWVRRVGRTGXXXRKGLVTILAQGKQV 417          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: W7TFZ4_9STRA (Dead-box atp-dependent rna helicase 50-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFZ4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 7.350e-38
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQ-FETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E+VL+DCSGP  E RNEETG  RKRD L+  L +    R+LVFCN+I  CR+    VEN L RA R+ + ++ L YHSA++P+   +N+  F  S    P++MVCTDR+SRG+DFD A        V+HV+L+DFPRDP EY+RRVG          VT L  GRQV
Sbjct:  278 EEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRK----VENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFS-SRVERPLIMVCTDRTSRGVDFDTAD-------VQHVVLFDFPRDPSEYVRRVGXXXXXXXXXXVTALVLGRQV 432          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A0C9RPX7_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_28233_2443 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RPX7_9SPER)

HSP 1 Score: 143 bits (360), Expect = 7.310e-37
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQ-FETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E++LIDCSG  GE RN ET    K+ ALL  LE+  V +TL+FCN I+ CR+    VEN+L R  RKG+    L +H+A+  +    NM++F+ S +     ++CTDR+SRG+D            V+HV+L+DFPRDP EY+RRVGRTARAGR+G     A G+QV
Sbjct:  413 EEILIDCSGE-GEERNPETAFENKKTALLQLLEQSPVQKTLIFCNKIETCRK----VENVLKRYDRKGRKVSVLPFHAAVSQESRVSNMKRFLDSQSEQSRFLICTDRASRGLDLVN---------VDHVVLFDFPRDPSEYVRRVGRTARAGRRGKAFAFAVGKQV 565          
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Match: A0A4D9D599_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D599_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.430e-37
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 0
Query:    4 EKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTIQGCRQASASVENILSRASRKGQ-FETLVYHSAIDPKKAAENMRQFMRSNALIPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQV 169
            E+VL+DCSGP  E RNEETG  RKRD L+  L +    R+LVFCN+I  CR+    VEN L RA R+ + ++ L YHSA++P+   +N+  F  S    P++MVCTDR+SRG+DFD A        V+HV+L+DFPRDP EY+RRVG          VT L  GRQV
Sbjct:  544 EEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRK----VENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFS-SRVERPLIMVCTDRTSRGVDFDTAD-------VQHVVLFDFPRDPSEYVRRVGXXXXXXXXXXVTALVLGRQV 698          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15422.3573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR7_ECTSI5.610e-8786.14DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CPS5_9STRA3.280e-6667.86P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4DKM7_HETAK3.250e-5156.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V2H4_9STRA3.670e-5155.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4ET85_VITBC5.410e-4654.49Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
I2CPE5_NANGC8.590e-3949.70Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7R9YGA2_9STRA1.380e-3846.07Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TFZ4_9STRA7.350e-3849.70Dead-box atp-dependent rna helicase 50-like protei... [more]
A0A0C9RPX7_9SPER7.310e-3747.31TSA: Wollemia nobilis Ref_Wollemi_Transcript_28233... [more]
A0A4D9D599_9STRA8.430e-3749.70Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 62..155
e-value: 1.5E-5
score: 34.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 28..155
e-value: 1.5E-14
score: 54.2
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 27..169
score: 12.376
NoneNo IPR availableGENE3D3.40.50.300coord: 19..165
e-value: 7.6E-25
score: 89.8
NoneNo IPR availablePANTHERPTHR24031:SF707DEAD-BOX ATP-DEPENDENT RNA HELICASE 50coord: 4..158
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 4..158
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 24..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15422contigH-elongata_contig15422:284..7623 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15422.3573.1mRNA_H-elongata_contig15422.3573.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15422 284..7623 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15422.3573.1 ID=prot_H-elongata_contig15422.3573.1|Name=mRNA_H-elongata_contig15422.3573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
MNSEKVLIDCSGPPGEPRNEETGMRRKRDALLSQLERRKVLRTLVFCNTI
QGCRQASASVENILSRASRKGQFETLVYHSAIDPKKAAENMRQFMRSNAL
IPMVMVCTDRSSRGMDFDRAQARAEPSLVEHVLLYDFPRDPIEYMRRVGR
TARAGRKGVVTVLAWGRQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase