prot_H-elongata_contig144006.3024.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig144006.3024.1
Unique Name	prot_H-elongata_contig144006.3024.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	180

Homology

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: A0A8K1PLZ7_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. polyclada TaxID=2856276 RepID=A0A8K1PLZ7_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.500e-126
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQS+
Sbjct:   48 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSENESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSV 227

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: K4EF25_9FLOR (Photosystem II D1 protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=K4EF25_9FLOR)

HSP 1 Score: 363 bits (933), Expect = 2.210e-126
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLT+LGVSTMAFNLNGFNFNQSI
Sbjct:   54 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSI 233

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: A0A8K1PPA0_9PHAE (PsbA (Fragment) n=1 Tax=Stypopodium multipartitum TaxID=1635156 RepID=A0A8K1PPA0_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 2.740e-126
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLG+STMAFNLNGFNFNQS+
Sbjct:   82 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEIESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGISTMAFNLNGFNFNQSV 261

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: E5DD64_9PHAE (Photosystem II reaction center protein D1 (Fragment) n=2 Tax=Dictyota TaxID=2875 RepID=E5DD64_9PHAE)

HSP 1 Score: 363 bits (932), Expect = 4.470e-126
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLG+STMAFNLNGFNFNQS+
Sbjct:   64 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSENESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGISTMAFNLNGFNFNQSV 243

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: A0A1L6CC91_9PHAE (Photosystem II protein D1 (Fragment) n=4 Tax=Dictyotaceae TaxID=2874 RepID=A0A1L6CC91_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 5.900e-126
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQS+
Sbjct:  105 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSV 284

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: D6MQW4_9PHAE (Photosystem II protein D1 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=D6MQW4_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 8.380e-126
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQS+
Sbjct:  102 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSV 281

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: E5DD45_9PHAE (Photosystem II reaction center protein D1 (Fragment) n=1 Tax=Dictyota fasciola TaxID=499618 RepID=E5DD45_9PHAE)

HSP 1 Score: 363 bits (932), Expect = 9.670e-126
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLG+STMAFNLNGFNFNQS+
Sbjct:   88 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSENESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGISTMAFNLNGFNFNQSV 267

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: A7J2F2_9PHAE (Photosystem II protein D1 (Fragment) n=1 Tax=Homoeostrichus sp. formosana TaxID=405573 RepID=A7J2F2_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 9.990e-126
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLG+STMAFNLNGFNFNQS+
Sbjct:  100 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSESESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGISTMAFNLNGFNFNQSV 279

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: A0A7T7DA47_9PHAE (Photosystem II protein D1 (Fragment) n=1 Tax=Sphacella subtilissima TaxID=116070 RepID=A0A7T7DA47_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.150e-125
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLT+LGVSTMAFNLNGFNFNQSI
Sbjct:  104 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEIESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSI 283

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BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.300e-125
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSI 180
            MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQS+
Sbjct:  115 MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSV 294

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot

BLAST of mRNA_H-elongata_contig144006.3024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8K1PLZ7_9PHAE	1.500e-126	98.89	PsbA (Fragment) n=1 Tax=Dictyota cf. polyclada Tax...	[more]
K4EF25_9FLOR	2.210e-126	98.89	Photosystem II D1 protein (Fragment) n=2 Tax=Eukar...	[more]
A0A8K1PPA0_9PHAE	2.740e-126	98.33	PsbA (Fragment) n=1 Tax=Stypopodium multipartitum ...	[more]
E5DD64_9PHAE	4.470e-126	98.33	Photosystem II reaction center protein D1 (Fragmen...	[more]
A0A1L6CC91_9PHAE	5.900e-126	98.89	Photosystem II protein D1 (Fragment) n=4 Tax=Dicty...	[more]
D6MQW4_9PHAE	8.380e-126	98.33	Photosystem II protein D1 (Fragment) n=3 Tax=Phaeo...	[more]
E5DD45_9PHAE	9.670e-126	98.33	Photosystem II reaction center protein D1 (Fragmen...	[more]
A7J2F2_9PHAE	9.990e-126	98.33	Photosystem II protein D1 (Fragment) n=1 Tax=Homoe...	[more]
A0A7T7DA47_9PHAE	1.150e-125	98.33	Photosystem II protein D1 (Fragment) n=1 Tax=Sphac...	[more]
Q5SFY7_9PHAE	1.300e-125	98.89	Photosystem II protein D1 (Fragment) n=10 Tax=Phae...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..168 e-value: 1.7E-59 score: 201.2
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..180
IPR000484	Photosynthetic reaction centre, L/M	PROSITE	PS00244	REACTION_CENTER	coord: 65..91
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 16..161 e-value: 1.4E-24 score: 88.6
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..180
None	No IPR available	PANTHER	PTHR33149:SF11		coord: 1..180
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 147..169
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 16..37
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 38..146
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..15
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 170..180
None	No IPR available	TMHMM	TMhelix		coord: 71..93
None	No IPR available	TMHMM	TMhelix		coord: 147..169
None	No IPR available	TMHMM	TMhelix		coord: 16..38

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig144006	contig	H-elongata_contig144006:16..555 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig144006.3024.1	mRNA_H-elongata_contig144006.3024.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig144006 16..555 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig144006.3024.1 ID=prot_H-elongata_contig144006.3024.1|Name=mRNA_H-elongata_contig144006.3024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGI
SGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRE
TSEFESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA
AWPVVGIWLTSLGVSTMAFNLNGFNFNQSI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf