prot_H-elongata_contig134154.2422.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig134154.2422.1
Unique Nameprot_H-elongata_contig134154.2422.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length206
Homology
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BLAST of mRNA_H-elongata_contig134154.2422.1 vs. uniprot
Match: D8LTE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE0_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-7
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0 
Query:    1 MEGLTSDEEGRFKILAGVAALSLGGLLVQPLFAPEDLA----KPTPTV 44
            MEGLT+ +EG  K L+ VAA+ LGGLLVQPLFAP DLA    KPTPTV
Sbjct:  196 MEGLTASDEGAVKALSAVAAVCLGGLLVQPLFAPPDLASLPAKPTPTV 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134154.2422.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTE0_ECTSI1.420e-768.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..205
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134154contigH-elongata_contig134154:9..626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134154.2422.1mRNA_H-elongata_contig134154.2422.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig134154 6..626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig134154.2422.1 ID=prot_H-elongata_contig134154.2422.1|Name=mRNA_H-elongata_contig134154.2422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MEGLTSDEEGRFKILAGVAALSLGGLLVQPLFAPEDLAKPTPTVQTQKTP
APAPAPAPAPAPKKDPTPAPKPEPAPAPAPAPKPAPAPAPEPKSEPAPAP
APAPKPEPAPVPTPAPKPEPAPVPAPAPKPEPKPEPTLAPAPAPAPKTEP
APAPAPAPKPKTKPSPASAPAPAPAYTGPSGGRVLEAETLSPDLLKALKG
SKTKK*
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